Detail information of GWHGAAZE008998


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009778693.13.3363E-147PREDICTED: arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like [Nicotiana sylvestris]
Swissprottr|Q9SGD6|AROD6_ARATH4E-112Arogenate dehydratase/prephenate dehydratase 6, chloroplastic (Precursor)
trEMBLtr|A5BWG3|A5BWG3_VITVI1E-142Putative uncharacterized protein {ECO:0000313|EMBL:CAN68383.1}
TAIR10AT1G08250.11E-91arogenate dehydratase 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene9938430399386264+
GWHAAZE00000002mRNA9938430399386264+
GWHAAZE00000002exon9938430399385078+
GWHAAZE00000002exon9938601899386264+
GWHAAZE00000002CDS9938430399385078+
GWHAAZE00000002CDS9938601899386264+
Transcript Sequence

Network for GWHGAAZE008998

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00800.19PDT1292632.70E-40
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K05359ADT, PDT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400

Gene Ontology

GO term OntologyName
GO:0009094biological_processL-phenylalanine biosynthetic process
GO:0004664molecular_functionprephenate dehydratase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf56.233
SRR3591706second leaf76.475
SRR3591707mature leaf101.586
SRR3591708Shoot apex55.934
SRR3591709Stem290.746
SRR3591710White floral bud68.072
SRR3591711White flower106.844
SRR3591712Green floral bud82.010
SRR3591713Yellow flower79.031
SRP173429 SRR8316895Juvenile bud stage 73.984
SRR8316896Juvenile bud stage 41.033
SRR8316897Juvenile bud stage 39.373
SRR8316894Third green stage 18.391
SRR8316900Third green stage 44.004
SRR8316901Third green stage 65.720
SRR8316898Complete white stage 22.482
SRR8316899Complete white stage 223.643
SRR8316903Complete white stage 31.319
SRR8316902Silver flowering stage136.159
SRR8316904Silver flowering stage144.550
SRR8316905Silver flowering stage103.472
SRR8316906Gold flowering stage 480.079
SRR8316907Gold flowering stage 427.119
SRR8316908Gold flowering stage 425.375
SRP132670SRR6706286Control41.383
SRR6706287Light intensity 50%62.255
SRR6706288Light intensity 20%76.804
CNP0000432CNS0095592Slightly white alabastrum(diploid) 184.243
CNS0095593Slightly white alabastrum(diploid) 299.520
CNS0095594Slightly white alabastrum(diploid) 3112.920
CNS0095595Whole white alabastrum(diploid) 268.663
CNS0095596Whole white alabastrum(diploid) 336.999
CNS0095597Whole white alabastrum(diploid) 473.210
CNS0095598Silvery flower (diploied) 167.886
CNS0095599Silvery flower (diploied) 285.661
CNS0095600Silvery flower (diploied) 366.158
CNS0095601Golden flower (diploid) 159.344
CNS0095602Golden flower (diploid) 283.475
CNS0095603Golden flower (diploid) 379.262
CNS0095604Slightly white alabastrum(tetraploid) 153.733
CNS0095605Slightly white alabastrum(tetraploid) 236.659
CNS0095606Slightly white alabastrum(tetraploid) 398.924
CNS0095607Whole white alabastrum(tetraploid) 139.687
CNS0095608Whole white alabastrum(tetraploid) 229.988
CNS0095609Whole white alabastrum(tetraploid) 363.954
CNS0095610Silvery flower (tetraploid) 175.845
CNS0095611Silvery flower (tetraploid) 253.657
CNS0095612Silvery flower (tetraploid) 3238.578
CNS0095613Golden flower (tetraploid) 181.129
CNS0095614Golden flower (tetraploid) 284.216
CNS0095615Golden flower (tetraploid) 391.040
CRA001975CRR073297Stem 186.766
CRR073298Stem 282.640
CRR073299Stem 3109.525
CRR073300Leaf 184.606
CRR073301Leaf 295.163
CRR073302Leaf 3131.805
CRR073303Juvenile bud 1109.991
CRR073304Juvenile bud 2192.396
CRR073305Juvenile bud 3105.101
CRR073306Third green 12367.012
CRR073307Third green 21445.999
CRR073308Third green 31612.756
CRR073309Second white 13476.092
CRR073310Second white 23789.687
CRR073311Second white 33343.699
CRR073312Silver flowering 13037.032
CRR073313Silver flowering 23395.570
CRR073314Silver flowering 32878.347
CRR073315Gold flowering 182.871
CRR073316Gold flowering 2250.861
CRR073317Gold flowering 3135.485
CRR073318Tawny withering 1114.213
CRR073319Tawny withering 2212.992
CRR073320Tawny withering 3142.058