Detail information of GWHGAAZE009006


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009364838.10PREDICTED: AP-2 complex subunit alpha-1-like [Pyrus x bretschneideri]
Swissprottr|Q8LPK4|AP2A2_ARATH0AP-2 complex subunit alpha-2
trEMBLtr|D7SN66|D7SN66_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI17095.3}
TAIR10AT5G22770.30alpha-adaptin

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene9961434199636109-
GWHAAZE00000002mRNA9961434199636109-
GWHAAZE00000002exon9963597899636109-
GWHAAZE00000002exon9963393099634061-
GWHAAZE00000002exon9963277699632901-
GWHAAZE00000002exon9962866299628724-
GWHAAZE00000002exon9962848299628579-
GWHAAZE00000002exon9962761799627824-
GWHAAZE00000002exon9962576499625835-
GWHAAZE00000002exon9962555799625649-
GWHAAZE00000002exon9962453799624638-
GWHAAZE00000002exon9962396099624057-
GWHAAZE00000002exon9962358499623665-
GWHAAZE00000002exon9962334799623435-
GWHAAZE00000002exon9962196099622065-
GWHAAZE00000002exon9962178599621850-
GWHAAZE00000002exon9962114699621252-
GWHAAZE00000002exon9962095699621060-
GWHAAZE00000002exon9962071699620836-
GWHAAZE00000002exon9962024199620420-
GWHAAZE00000002exon9961955799619781-
GWHAAZE00000002exon9961866799618747-
GWHAAZE00000002exon9961838599618549-
GWHAAZE00000002exon9961794799618036-
GWHAAZE00000002exon9961758899617713-
GWHAAZE00000002exon9961541299615525-
GWHAAZE00000002exon9961525599615326-
GWHAAZE00000002exon9961493199615010-
GWHAAZE00000002exon9961452699614659-
GWHAAZE00000002exon9961434199614444-
GWHAAZE00000002CDS9963597899636109-
GWHAAZE00000002CDS9963393099634061-
GWHAAZE00000002CDS9963277699632901-
GWHAAZE00000002CDS9962866299628724-
GWHAAZE00000002CDS9962848299628579-
GWHAAZE00000002CDS9962761799627824-
GWHAAZE00000002CDS9962576499625835-
GWHAAZE00000002CDS9962555799625649-
GWHAAZE00000002CDS9962453799624638-
GWHAAZE00000002CDS9962396099624057-
GWHAAZE00000002CDS9962358499623665-
GWHAAZE00000002CDS9962334799623435-
GWHAAZE00000002CDS9962196099622065-
GWHAAZE00000002CDS9962178599621850-
GWHAAZE00000002CDS9962114699621252-
GWHAAZE00000002CDS9962095699621060-
GWHAAZE00000002CDS9962071699620836-
GWHAAZE00000002CDS9962024199620420-
GWHAAZE00000002CDS9961955799619781-
GWHAAZE00000002CDS9961866799618747-
GWHAAZE00000002CDS9961838599618549-
GWHAAZE00000002CDS9961794799618036-
GWHAAZE00000002CDS9961758899617713-
GWHAAZE00000002CDS9961541299615525-
GWHAAZE00000002CDS9961525599615326-
GWHAAZE00000002CDS9961493199615010-
GWHAAZE00000002CDS9961452699614659-
GWHAAZE00000002CDS9961434199614444-
Transcript Sequence

Network for GWHGAAZE009006

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01602.21Adaptin_N285811.80E-110
PF02883.21Alpha_adaptinC27528466.10E-12
PF02296.17Alpha_adaptin_C8619791.00E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11824AP2A Endocytosis map04144
Endocrine and other factor-regulated calcium reabsorptionmap04961
Synaptic vesicle cyclemap04721

Gene Ontology

GO term OntologyName
GO:0006886biological_processintracellular protein transport
GO:0016192biological_processvesicle-mediated transport
GO:0015031biological_processprotein transport
GO:0072583biological_processclathrin-dependent endocytosis
GO:0030122cellular_componentAP-2 adaptor complex
GO:0030131cellular_componentclathrin adaptor complex
GO:0030117cellular_componentmembrane coat
GO:0035615molecular_functionclathrin adaptor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.610
SRR3591706second leaf6.418
SRR3591707mature leaf3.996
SRR3591708Shoot apex9.961
SRR3591709Stem8.534
SRR3591710White floral bud6.386
SRR3591711White flower5.889
SRR3591712Green floral bud11.294
SRR3591713Yellow flower5.677
SRP173429 SRR8316895Juvenile bud stage 8.229
SRR8316896Juvenile bud stage 11.611
SRR8316897Juvenile bud stage 6.811
SRR8316894Third green stage 5.395
SRR8316900Third green stage 13.195
SRR8316901Third green stage 12.522
SRR8316898Complete white stage 2.340
SRR8316899Complete white stage 9.557
SRR8316903Complete white stage 5.615
SRR8316902Silver flowering stage3.307
SRR8316904Silver flowering stage5.053
SRR8316905Silver flowering stage1.684
SRR8316906Gold flowering stage 6.293
SRR8316907Gold flowering stage 5.915
SRR8316908Gold flowering stage 6.507
SRP132670SRR6706286Control8.761
SRR6706287Light intensity 50%8.993
SRR6706288Light intensity 20%10.395
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.774
CNS0095593Slightly white alabastrum(diploid) 27.537
CNS0095594Slightly white alabastrum(diploid) 36.594
CNS0095595Whole white alabastrum(diploid) 26.956
CNS0095596Whole white alabastrum(diploid) 37.601
CNS0095597Whole white alabastrum(diploid) 47.980
CNS0095598Silvery flower (diploied) 15.481
CNS0095599Silvery flower (diploied) 26.606
CNS0095600Silvery flower (diploied) 36.645
CNS0095601Golden flower (diploid) 15.998
CNS0095602Golden flower (diploid) 25.952
CNS0095603Golden flower (diploid) 35.774
CNS0095604Slightly white alabastrum(tetraploid) 110.937
CNS0095605Slightly white alabastrum(tetraploid) 29.469
CNS0095606Slightly white alabastrum(tetraploid) 313.963
CNS0095607Whole white alabastrum(tetraploid) 110.424
CNS0095608Whole white alabastrum(tetraploid) 210.716
CNS0095609Whole white alabastrum(tetraploid) 311.927
CNS0095610Silvery flower (tetraploid) 17.064
CNS0095611Silvery flower (tetraploid) 25.956
CNS0095612Silvery flower (tetraploid) 37.844
CNS0095613Golden flower (tetraploid) 12.614
CNS0095614Golden flower (tetraploid) 26.061
CNS0095615Golden flower (tetraploid) 32.443
CRA001975CRR073297Stem 112.537
CRR073298Stem 211.754
CRR073299Stem 35.965
CRR073300Leaf 115.949
CRR073301Leaf 213.224
CRR073302Leaf 37.120
CRR073303Juvenile bud 18.078
CRR073304Juvenile bud 25.331
CRR073305Juvenile bud 37.675
CRR073306Third green 11.714
CRR073307Third green 22.361
CRR073308Third green 32.574
CRR073309Second white 11.308
CRR073310Second white 22.143
CRR073311Second white 32.137
CRR073312Silver flowering 12.348
CRR073313Silver flowering 22.477
CRR073314Silver flowering 32.611
CRR073315Gold flowering 13.144
CRR073316Gold flowering 25.871
CRR073317Gold flowering 31.601
CRR073318Tawny withering 17.731
CRR073319Tawny withering 28.237
CRR073320Tawny withering 39.779