Gene detail

Detail information of GWHGAAZE009010

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO71192.1	4.37715E-36	hypothetical protein CISIN_1g039590mg [Citrus sinensis]
Swissprot	tr\|Q9LU24\|FB145_ARATH	1E-12	Putative F-box protein At3g16210
trEMBL	tr\|A0A067G6P4\|A0A067G6P4_CITSI	2E-36	Uncharacterized protein {ECO:0000313\|EMBL:KDO71192.1}
TAIR10	AT3G16210.1	4E-12	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	99676244	99677598	+
GWHAAZE00000002	mRNA	99676244	99677598	+
GWHAAZE00000002	exon	99676244	99676397	+
GWHAAZE00000002	exon	99676548	99676962	+
GWHAAZE00000002	exon	99677088	99677598	+
GWHAAZE00000002	CDS	99676244	99676397	+
GWHAAZE00000002	CDS	99676548	99676962	+
GWHAAZE00000002	CDS	99677088	99677598	+

Transcript Sequence
>GWHTAAZE009020 ATGGAAAACACAAGGAGCAGTGGCGATCTTCCATATCTGCCGGAAGATTTGTTGATAGACGAGATTCTGGTGAGGCTGCCGGTGAAATCACTCCTTCAATTCAAGTGCGTATGCAAGAACTGGTATAATCTAATCAAATCCCCTCGCTTCATTCTTTTCCCCGACGAAACTCTAGCGGCCCTGCCCCTTGGACATGAGGATGTTATTAATTTTATACAGCGTTGCCCTAATCTACATGAAATTCATATGATTGGTCCCATTAACGGCTTGTTCTTACTCCACACTGCTTTTGATGGTAGAAACGCTCGTTTGGCCCTGTGGAACCCTGCTACAACAGAGTTCAGGCGCCTCCCTAAACCCAAGTTTAGGTTTCCAGTGGGTAAACTCCGCTGTGTTTCCGGATTTGGTTTGGACCCCTTGACAAAGGATTACAAGGTTGTTTGGATTCCTACTTTTTGGTCCTACGCTCCTCATGATCTTGCAGCAGTTGCATTGTATATCCCCGGAACTGATGAATCTTGGAGACAAATTGAAAACCCTCATGTTTTGGCTGCGGTCCCTGGCATATGGGATGTGTTTCGGAAGATACTGGCTCCGCATAATGTCAATGCTACATCGAGTGGTAATAATCGTTTGGTGCAAATTGACGACTCGATTGCTCTACTGGAAAACGAATACATATCAATATATAGTAGTTGCGTGAAATTTATTCATGTTTGGGTAATGAAGGAAGAAGGTTGTTGGACCAAACGTTTCACTCTTGGACGTGAAGCCATGGTAAAAATTCGGTACCCACTTGGGTTTTGGAAGAATAGTAATGAGCTTTTCGTCGAGACTGCCACTGGCAAACTTGTTTTGTATGACCTTAATACCCAAAGAGTTAAGGATCTTGGAATCTGTGGTGACGAAGGAGCCAGTTTCCTTCGGGTTTTCAAATACAAGGAGAGCCTAGTTTCAATCAAGGGAGGACAAAAGGAGAACTGGAGCAGGGACAAACTGCGTTATATCATTATGGATTTCCTTGATGTATCTGAATTGACTGAGGATGAGGACGAGGAGGAGGGGACTAAGAATGAATGA

Network for GWHGAAZE009010

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	13	50	1.30E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.773
	SRR3591706	second leaf	0.144
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	1.003
	SRR3591709	Stem	0.485
	SRR3591710	White floral bud	0.323
	SRR3591711	White flower	0.388
	SRR3591712	Green floral bud	0.255
	SRR3591713	Yellow flower	0.201
SRP173429	SRR8316895	Juvenile bud stage	0.128
	SRR8316896	Juvenile bud stage	0.104
	SRR8316897	Juvenile bud stage	0.179
	SRR8316894	Third green stage	0.331
	SRR8316900	Third green stage	0.176
	SRR8316901	Third green stage	0.033
	SRR8316898	Complete white stage	0.042
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.019
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.123
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.016
SRP132670	SRR6706286	Control	0.047
	SRR6706287	Light intensity 50%	0.058
	SRR6706288	Light intensity 20%	0.080
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.131
	CNS0095593	Slightly white alabastrum(diploid) 2	0.149
	CNS0095594	Slightly white alabastrum(diploid) 3	0.282
	CNS0095595	Whole white alabastrum(diploid) 2	0.082
	CNS0095596	Whole white alabastrum(diploid) 3	0.102
	CNS0095597	Whole white alabastrum(diploid) 4	0.161
	CNS0095598	Silvery flower (diploied) 1	0.298
	CNS0095599	Silvery flower (diploied) 2	0.601
	CNS0095600	Silvery flower (diploied) 3	0.122
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.008
	CNS0095603	Golden flower (diploid) 3	0.016
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.610
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.366
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.172
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.747
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.051
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.313
	CNS0095610	Silvery flower (tetraploid) 1	0.006
	CNS0095611	Silvery flower (tetraploid) 2	0.159
	CNS0095612	Silvery flower (tetraploid) 3	0.017
	CNS0095613	Golden flower (tetraploid) 1	0.146
	CNS0095614	Golden flower (tetraploid) 2	0.028
	CNS0095615	Golden flower (tetraploid) 3	0.114
CRA001975	CRR073297	Stem 1	0.163
	CRR073298	Stem 2	0.254
	CRR073299	Stem 3	0.147
	CRR073300	Leaf 1	0.031
	CRR073301	Leaf 2	0.140
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.181
	CRR073306	Third green 1	0.050
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.825
	CRR073319	Tawny withering 2	0.296
	CRR073320	Tawny withering 3	0.305