Detail information of GWHGAAZE009011


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009613221.14.88362E-41PREDICTED: F-box protein CPR30-like [Nicotiana tomentosiformis]
Swissprottr|Q9LU24|FB145_ARATH4E-16Putative F-box protein At3g16210
trEMBLtr|M1DZM1|M1DZM1_SOLTU2E-37Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400096968}
TAIR10AT3G16210.12E-15F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene9968690699688255+
GWHAAZE00000002mRNA9968690699688255+
GWHAAZE00000002exon9968690699688255+
GWHAAZE00000002CDS9968690699688255+
Transcript Sequence

Network for GWHGAAZE009011

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box4436.80E-07
PF07734.14FBA_12483773.40E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.793
SRR3591706second leaf0.563
SRR3591707mature leaf1.928
SRR3591708Shoot apex0.476
SRR3591709Stem1.078
SRR3591710White floral bud4.005
SRR3591711White flower3.535
SRR3591712Green floral bud2.584
SRR3591713Yellow flower2.858
SRP173429 SRR8316895Juvenile bud stage 1.005
SRR8316896Juvenile bud stage 2.906
SRR8316897Juvenile bud stage 0.352
SRR8316894Third green stage 0.851
SRR8316900Third green stage 2.724
SRR8316901Third green stage 4.105
SRR8316898Complete white stage 1.473
SRR8316899Complete white stage 5.709
SRR8316903Complete white stage 3.634
SRR8316902Silver flowering stage1.937
SRR8316904Silver flowering stage3.550
SRR8316905Silver flowering stage1.572
SRR8316906Gold flowering stage 4.350
SRR8316907Gold flowering stage 3.316
SRR8316908Gold flowering stage 3.005
SRP132670SRR6706286Control4.065
SRR6706287Light intensity 50%4.041
SRR6706288Light intensity 20%4.521
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.964
CNS0095593Slightly white alabastrum(diploid) 21.201
CNS0095594Slightly white alabastrum(diploid) 32.612
CNS0095595Whole white alabastrum(diploid) 22.088
CNS0095596Whole white alabastrum(diploid) 31.959
CNS0095597Whole white alabastrum(diploid) 42.553
CNS0095598Silvery flower (diploied) 10.981
CNS0095599Silvery flower (diploied) 22.498
CNS0095600Silvery flower (diploied) 36.415
CNS0095601Golden flower (diploid) 12.450
CNS0095602Golden flower (diploid) 23.415
CNS0095603Golden flower (diploid) 33.908
CNS0095604Slightly white alabastrum(tetraploid) 11.833
CNS0095605Slightly white alabastrum(tetraploid) 21.464
CNS0095606Slightly white alabastrum(tetraploid) 32.612
CNS0095607Whole white alabastrum(tetraploid) 12.633
CNS0095608Whole white alabastrum(tetraploid) 21.785
CNS0095609Whole white alabastrum(tetraploid) 33.280
CNS0095610Silvery flower (tetraploid) 17.000
CNS0095611Silvery flower (tetraploid) 26.643
CNS0095612Silvery flower (tetraploid) 37.788
CNS0095613Golden flower (tetraploid) 12.845
CNS0095614Golden flower (tetraploid) 24.818
CNS0095615Golden flower (tetraploid) 37.303
CRA001975CRR073297Stem 11.933
CRR073298Stem 22.989
CRR073299Stem 32.109
CRR073300Leaf 13.141
CRR073301Leaf 22.570
CRR073302Leaf 32.392
CRR073303Juvenile bud 14.174
CRR073304Juvenile bud 22.013
CRR073305Juvenile bud 34.412
CRR073306Third green 11.741
CRR073307Third green 21.820
CRR073308Third green 31.823
CRR073309Second white 13.090
CRR073310Second white 20.985
CRR073311Second white 31.950
CRR073312Silver flowering 11.527
CRR073313Silver flowering 21.926
CRR073314Silver flowering 32.509
CRR073315Gold flowering 10.716
CRR073316Gold flowering 21.197
CRR073317Gold flowering 31.312
CRR073318Tawny withering 11.472
CRR073319Tawny withering 20.420
CRR073320Tawny withering 30.464