Detail information of GWHGAAZE009014


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009597313.11.1332E-52PREDICTED: F-box only protein 8-like [Nicotiana tomentosiformis]
Swissprottr|Q8GXC7|FBK50_ARATH3E-18F-box/kelch-repeat protein At3g06240
trEMBLtr|M1CBE4|M1CBE4_SOLTU5E-52Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400063867}
TAIR10AT3G06240.14E-13F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene9974813599749484-
GWHAAZE00000002mRNA9974813599749484-
GWHAAZE00000002exon9974925499749484-
GWHAAZE00000002exon9974813599749223-
GWHAAZE00000002CDS9974925499749484-
GWHAAZE00000002CDS9974813599749223-
Transcript Sequence

Network for GWHGAAZE009014

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box5479.80E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.095
SRR3591706second leaf0.343
SRR3591707mature leaf0.131
SRR3591708Shoot apex0.361
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.288
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 1.054
SRR8316896Juvenile bud stage 1.231
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.792
SRR8316900Third green stage 2.439
SRR8316901Third green stage 1.615
SRR8316898Complete white stage 0.693
SRR8316899Complete white stage 2.738
SRR8316903Complete white stage 1.493
SRR8316902Silver flowering stage0.723
SRR8316904Silver flowering stage0.621
SRR8316905Silver flowering stage0.414
SRR8316906Gold flowering stage 0.718
SRR8316907Gold flowering stage 0.665
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control2.839
SRR6706287Light intensity 50%2.590
SRR6706288Light intensity 20%2.424
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.469
CNS0095593Slightly white alabastrum(diploid) 21.135
CNS0095594Slightly white alabastrum(diploid) 31.953
CNS0095595Whole white alabastrum(diploid) 22.419
CNS0095596Whole white alabastrum(diploid) 31.909
CNS0095597Whole white alabastrum(diploid) 40.989
CNS0095598Silvery flower (diploied) 12.118
CNS0095599Silvery flower (diploied) 21.147
CNS0095600Silvery flower (diploied) 31.396
CNS0095601Golden flower (diploid) 10.401
CNS0095602Golden flower (diploid) 21.489
CNS0095603Golden flower (diploid) 31.594
CNS0095604Slightly white alabastrum(tetraploid) 10.146
CNS0095605Slightly white alabastrum(tetraploid) 20.034
CNS0095606Slightly white alabastrum(tetraploid) 30.303
CNS0095607Whole white alabastrum(tetraploid) 10.251
CNS0095608Whole white alabastrum(tetraploid) 20.161
CNS0095609Whole white alabastrum(tetraploid) 30.155
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.012
CNS0095613Golden flower (tetraploid) 10.008
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 13.405
CRR073298Stem 22.583
CRR073299Stem 33.800
CRR073300Leaf 12.551
CRR073301Leaf 21.727
CRR073302Leaf 32.740
CRR073303Juvenile bud 11.406
CRR073304Juvenile bud 20.695
CRR073305Juvenile bud 30.830
CRR073306Third green 10.211
CRR073307Third green 20.163
CRR073308Third green 30.086
CRR073309Second white 10.000
CRR073310Second white 20.023
CRR073311Second white 30.049
CRR073312Silver flowering 10.108
CRR073313Silver flowering 20.088
CRR073314Silver flowering 30.038
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.510
CRR073317Gold flowering 30.165
CRR073318Tawny withering 10.553
CRR073319Tawny withering 21.859
CRR073320Tawny withering 30.966