Gene detail

Detail information of GWHGAAZE009022

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010651834.1	PREDICTED: protein argonaute 5 [Vitis vinifera]
Swissprot	tr\|O04379\|AGO1_ARATH	Protein argonaute 1
trEMBL	tr\|D7SN77\|D7SN77_VITVI	Protein argonaute {ECO:0000256\|RuleBase:RU361178}
TAIR10	AT1G48410.1	Stabilizer of iron transporter SufD / Polynucleotidyl transferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	99882754	99892038	+
GWHAAZE00000002	mRNA	99882754	99892038	+
GWHAAZE00000002	exon	99882754	99882930	+
GWHAAZE00000002	exon	99883360	99883556	+
GWHAAZE00000002	exon	99883674	99883823	+
GWHAAZE00000002	exon	99883934	99884064	+
GWHAAZE00000002	exon	99884170	99884276	+
GWHAAZE00000002	exon	99884540	99884643	+
GWHAAZE00000002	exon	99885392	99885582	+
GWHAAZE00000002	exon	99886600	99886640	+
GWHAAZE00000002	exon	99886730	99886801	+
GWHAAZE00000002	exon	99887495	99887614	+
GWHAAZE00000002	exon	99887700	99887871	+
GWHAAZE00000002	exon	99888388	99888509	+
GWHAAZE00000002	exon	99888593	99888730	+
GWHAAZE00000002	exon	99889272	99889306	+
GWHAAZE00000002	exon	99889642	99889705	+
GWHAAZE00000002	exon	99890292	99890424	+
GWHAAZE00000002	exon	99890525	99890598	+
GWHAAZE00000002	exon	99891021	99891104	+
GWHAAZE00000002	exon	99891614	99892038	+
GWHAAZE00000002	CDS	99882754	99882930	+
GWHAAZE00000002	CDS	99883360	99883556	+
GWHAAZE00000002	CDS	99883674	99883823	+
GWHAAZE00000002	CDS	99883934	99884064	+
GWHAAZE00000002	CDS	99884170	99884276	+
GWHAAZE00000002	CDS	99884540	99884643	+
GWHAAZE00000002	CDS	99885392	99885582	+
GWHAAZE00000002	CDS	99886600	99886640	+
GWHAAZE00000002	CDS	99886730	99886801	+
GWHAAZE00000002	CDS	99887495	99887614	+
GWHAAZE00000002	CDS	99887700	99887871	+
GWHAAZE00000002	CDS	99888388	99888509	+
GWHAAZE00000002	CDS	99888593	99888730	+
GWHAAZE00000002	CDS	99889272	99889306	+
GWHAAZE00000002	CDS	99889642	99889705	+
GWHAAZE00000002	CDS	99890292	99890424	+
GWHAAZE00000002	CDS	99890525	99890598	+
GWHAAZE00000002	CDS	99891021	99891104	+
GWHAAZE00000002	CDS	99891614	99891784	+
GWHAAZE00000002	three_prime_UTR	99891785	99892038	+

Transcript Sequence
>GWHTAAZE009032 ATTCCGATAGAGTCGCCGGTAGAAACGGGACAAAAACTGGTACAGGCACCGCCGGTATCTAGCAAGGCGTTGAGGTTTCCGAGTAGGCCAGGGTACGGCACAATCGGCCGGAGATGCACCGTTCGTGCGAATCATTTTCTGGTGGAAGTTGCTGACCGAGATCTGCATCACTATGATGTGTCAATTACTCCTGAGATTACATCAAAGAAGGTGTGCAGAGATATAGTGAACACCTTGGTTCAGTTGTACAAAGAATCCCATCTGGGGAAGAGGCTATTAGCCTATGATGGAAGGAAAGGGGTCTACACTGCAGGGCCATTGCCTTTCACCTCCAAAGATTTTGTTGTCAAGCTCGTTGACAAAGATGGTGCAAGGAGAGACAGGGAATTTACAGTTTCAATCAAATTTGCTGCAAAAGTTGACCTCCATCATTTGCGTCAGTTCTTACAAAGTAGACAAGCCGACGCACCTCAAGAAACTATACAGGCCCTTGATGTAGTTTTGAGGGCAACACCTTCTGTCAAATATCAAGTTGTTGGAAGGTCATTCTTCTCTCCTCTATTTGAATTCGGTGAGCTTGATGGTGGTTTACATTACTGGAAGGGATTTTACCAAAGTCTACGCCCAACTCAAATGGGCCTTTCCCTTAATATTGATATGTCAGCAAGAGCCTTTTTTGAGCCCATATTGGTTTCTGAATTTGTTCAAAAATATTTTAACAAAGATCTAAACAGGCCGCTCACTGATCAAGACAGGGTTAAGGTTAAGAGAGCTCTGAAAGGTATCAGGGTTCAATTTAATAATAGGGAAAATGTGAAAAGATACAAAATTGCAAGCCTCTCTAATCAACCCATTTGCGAGTTGAACTATGTCAGTGCATTTGACAATTTACTTTTATCATTTTTTGAAAACAGATTTCCCATTGATGAATCCGGTGCGGAAGTATCAGTTATGCAATACTATCGCCAGAAGTATGACATAGTTGTTAAGTATAAATACTTACCTGCACTTAATGCAGGGACAGATGCTAATCCTGTTTTTCTGCCTATGGAGGTTCAGCTTACGTCTGTTGATGCACGGGTTTTGCCGCCGCCAACGCTGAAGTATCATGAAACTGGGAAAGAGGCACGGGTTGATCCCCATGTGGGGCAATGGAACATGATCAACAAGAAAATGATTAATGGCGGTAGGGTAGACTTTTGGTCATTTGTCAACTTCTCGAGGAACAGGCCAGATATGGTTGACCAATTTTGTCAGGAATTGATTTCGATGTGTTGCAGCAAAGGAATGGTTTTCAATACGCCACCTATCCTTCCTGTTCATTCAGTGAATACTAGAAATGTTGAGAAGGTTCTTCATGACATCAACGGACAGTGCAAGGCCGAAATGAAAAGAATGGGGCATGCAGACAAGGGACTACAGCTCTTAATTGTTATATTGCCTGACGCCAGTGGGTCTTATGGGACGATCAAGCGGGTTTGTGAAACTGAGTTGGGGATTGTCTCACAGTGTTGTCAGCCCAAGCATGTATCAAGGCTTAGTAAGCAATACCTTGAAAATGTTTCTCTTAAGATTAATGTGAAGGCCGGGGGACGAAACACTGTCTTAGTTAATGCTGTTGAAAGAAGAATTCCTCTAGTAACTGATCGCCCAACGATAATCATTGGTGCTGATGTGACTCATCCTCAGGCAGGGGAGGATTCTAGCCCTTCAATTGCCGCGGTGGTGGCTTCAATGGATTGGCCAGAAATAACGAAAGATGGAGTTAGTGAAGGTCAATTCAGTCAAGTGTTGCTGTATGAGATGGATGCCATCCGAAAGGCGTGTGCCTCTTTGGAGGAGAACTATCTCCCACCTGTGACCTTTGTGGTGGTGCAAAAGAGGCACCATACACGTCTCTTTCCTGCCAATGCTGATAGAAATAACACCGATAGGAGTGGCAACATTTTACCAGGTACCATTGTCGAGACGAGTATTTGTCATCCAACTGAGTTTGATTTCTACCTTTGCAGCCATTCAGGTATTCAGGTTTGCGAGATGTACTCGGTCGGTTTCTATTGGTTAGTCCTTTTCCCTTTCGGTAGATTAATTTTCATTTGCATCATTGTGCCTTACCACCTGCATATTATGCATTTAGCAGCTTTTCGTGCACGCTACTACATTGAAGGAGACACAGAGAATGAATCCTCTAGCGGTGGTAGACCAACAAGGGACAGGACAGCAGAGGTTCGGCCACTGCCGGTGATCAAAGATAATGTGAAGGATGTCATGTTTTACTGCTGATATCAAAGATTGTTTTTTGCTTATAGTTTATACAGGGTTATGTTGGATGGCGTTTAGTATTAAGACTTCTTTTTGTAGCCTTACGGCTTATTGGTGTTTTCCTGGGTGGTGATTTTGGACCACCGTTTGTTTTTTCTTCTGTTAAGCCAACCTCATCGGTAGGTACTCTTTTTGACATTTGTTTCTCAAATGTATTTAATATATTATGAGTGGCCATTTGGCCCGTTTTATTAACAATCTTATTTACTAACGTA

Network for GWHGAAZE009022

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16486.6	ArgoN	37	168	1.70E-32
PF08699.11	ArgoL1	179	226	2.20E-18
PF02170.23	PAZ	234	352	1.70E-10
PF16487.6	ArgoMid	380	456	6.90E-07
PF02171.18	Piwi	476	585	1.60E-26
PF02171.18	Piwi	586	676	6.40E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11593	ELF2C, AGO	Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.805
	SRR3591706	second leaf	20.862
	SRR3591707	mature leaf	5.808
	SRR3591708	Shoot apex	28.165
	SRR3591709	Stem	59.064
	SRR3591710	White floral bud	29.005
	SRR3591711	White flower	23.200
	SRR3591712	Green floral bud	39.289
	SRR3591713	Yellow flower	4.805
SRP173429	SRR8316895	Juvenile bud stage	28.516
	SRR8316896	Juvenile bud stage	38.921
	SRR8316897	Juvenile bud stage	25.067
	SRR8316894	Third green stage	20.618
	SRR8316900	Third green stage	52.318
	SRR8316901	Third green stage	57.938
	SRR8316898	Complete white stage	7.575
	SRR8316899	Complete white stage	46.749
	SRR8316903	Complete white stage	17.067
	SRR8316902	Silver flowering stage	9.546
	SRR8316904	Silver flowering stage	11.452
	SRR8316905	Silver flowering stage	4.173
	SRR8316906	Gold flowering stage	5.775
	SRR8316907	Gold flowering stage	7.644
	SRR8316908	Gold flowering stage	8.438
SRP132670	SRR6706286	Control	47.925
	SRR6706287	Light intensity 50%	49.287
	SRR6706288	Light intensity 20%	47.484
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.504
	CNS0095593	Slightly white alabastrum(diploid) 2	40.250
	CNS0095594	Slightly white alabastrum(diploid) 3	36.610
	CNS0095595	Whole white alabastrum(diploid) 2	39.268
	CNS0095596	Whole white alabastrum(diploid) 3	29.621
	CNS0095597	Whole white alabastrum(diploid) 4	30.069
	CNS0095598	Silvery flower (diploied) 1	24.940
	CNS0095599	Silvery flower (diploied) 2	21.842
	CNS0095600	Silvery flower (diploied) 3	11.566
	CNS0095601	Golden flower (diploid) 1	16.163
	CNS0095602	Golden flower (diploid) 2	10.771
	CNS0095603	Golden flower (diploid) 3	12.409
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.220
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.844
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.494
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.935
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.349
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.101
	CNS0095610	Silvery flower (tetraploid) 1	8.369
	CNS0095611	Silvery flower (tetraploid) 2	7.187
	CNS0095612	Silvery flower (tetraploid) 3	10.421
	CNS0095613	Golden flower (tetraploid) 1	1.431
	CNS0095614	Golden flower (tetraploid) 2	2.739
	CNS0095615	Golden flower (tetraploid) 3	1.646
CRA001975	CRR073297	Stem 1	43.449
	CRR073298	Stem 2	40.356
	CRR073299	Stem 3	32.958
	CRR073300	Leaf 1	46.880
	CRR073301	Leaf 2	48.915
	CRR073302	Leaf 3	42.635
	CRR073303	Juvenile bud 1	31.619
	CRR073304	Juvenile bud 2	16.363
	CRR073305	Juvenile bud 3	42.328
	CRR073306	Third green 1	6.377
	CRR073307	Third green 2	7.193
	CRR073308	Third green 3	10.932
	CRR073309	Second white 1	4.676
	CRR073310	Second white 2	3.405
	CRR073311	Second white 3	2.321
	CRR073312	Silver flowering 1	2.656
	CRR073313	Silver flowering 2	2.635
	CRR073314	Silver flowering 3	2.307
	CRR073315	Gold flowering 1	10.520
	CRR073316	Gold flowering 2	22.188
	CRR073317	Gold flowering 3	12.760
	CRR073318	Tawny withering 1	18.620
	CRR073319	Tawny withering 2	19.639
	CRR073320	Tawny withering 3	17.675