Gene detail

Detail information of GWHGAAZE009029

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009608773.1	0	PREDICTED: protein argonaute 5 [Nicotiana tomentosiformis]
Swissprot	tr\|Q10F39\|AGO11_ORYSJ	0	Protein argonaute 11
trEMBL	tr\|A0A068UET0\|A0A068UET0_COFCA	0	Protein argonaute {ECO:0000256\|RuleBase:RU361178}
TAIR10	AT1G48410.1	2E-157	Stabilizer of iron transporter SufD / Polynucleotidyl transferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	100080265	100091905	+
GWHAAZE00000002	mRNA	100080265	100091905	+
GWHAAZE00000002	exon	100080265	100080312	+
GWHAAZE00000002	exon	100082069	100082284	+
GWHAAZE00000002	exon	100082485	100082670	+
GWHAAZE00000002	exon	100083106	100083302	+
GWHAAZE00000002	exon	100083420	100083569	+
GWHAAZE00000002	exon	100083680	100083810	+
GWHAAZE00000002	exon	100083916	100084022	+
GWHAAZE00000002	exon	100084286	100084304	+
GWHAAZE00000002	exon	100084706	100084745	+
GWHAAZE00000002	exon	100085129	100085315	+
GWHAAZE00000002	exon	100086453	100086524	+
GWHAAZE00000002	exon	100087220	100087339	+
GWHAAZE00000002	exon	100087425	100087596	+
GWHAAZE00000002	exon	100088114	100088235	+
GWHAAZE00000002	exon	100088983	100089125	+
GWHAAZE00000002	exon	100089210	100089272	+
GWHAAZE00000002	exon	100089357	100089420	+
GWHAAZE00000002	exon	100090009	100090141	+
GWHAAZE00000002	exon	100090241	100090314	+
GWHAAZE00000002	exon	100090548	100090642	+
GWHAAZE00000002	exon	100090736	100090767	+
GWHAAZE00000002	exon	100091480	100091905	+
GWHAAZE00000002	CDS	100080265	100080312	+
GWHAAZE00000002	CDS	100082069	100082284	+
GWHAAZE00000002	CDS	100082485	100082670	+
GWHAAZE00000002	CDS	100083106	100083302	+
GWHAAZE00000002	CDS	100083420	100083569	+
GWHAAZE00000002	CDS	100083680	100083810	+
GWHAAZE00000002	CDS	100083916	100084022	+
GWHAAZE00000002	CDS	100084286	100084304	+
GWHAAZE00000002	CDS	100084706	100084745	+
GWHAAZE00000002	CDS	100085129	100085315	+
GWHAAZE00000002	CDS	100086453	100086524	+
GWHAAZE00000002	CDS	100087220	100087339	+
GWHAAZE00000002	CDS	100087425	100087596	+
GWHAAZE00000002	CDS	100088114	100088235	+
GWHAAZE00000002	CDS	100088983	100089125	+
GWHAAZE00000002	CDS	100089210	100089272	+
GWHAAZE00000002	CDS	100089357	100089420	+
GWHAAZE00000002	CDS	100090009	100090141	+
GWHAAZE00000002	CDS	100090241	100090314	+
GWHAAZE00000002	CDS	100090548	100090642	+
GWHAAZE00000002	CDS	100090736	100090767	+
GWHAAZE00000002	CDS	100091480	100091652	+
GWHAAZE00000002	three_prime_UTR	100091653	100091905	+

Transcript Sequence
>GWHTAAZE009039 ATGCATACGGCCAAACTCGACATGTTTAGCCTTAACCCCTTCCAATGTTCATCTGGACGCGGTGGAGGTAGAGGTCGAGGAACCGGCGGTTCATCAGGTTACCAGGCCGCCGGTCCTAATGTCAGATCATCTCCGGCTCCGGCTCCTGCTCAGAGGACGCAGGATGTGGCGTCATCATCGTCATCATCATCTCTGAGCCGAAACCTACAACAACTCTCTCTAGATACTCAGGCTCCTTCTCCGGCTGTGCAATCGTCGGTTCAGATTCCGATAGAGTCGCCGGTAGAAACTTCTCAGGCGGGACAAAAACTGGTACAGGCACCGCCGGTATCTAGCAAGGCGTTGAGGTTTCCGAGTAGGCCAGGGTACGGCACAATCGGCCGGAGATGCACCGTTCGTGCGAATCATTTTCTGGTGGAAGTTGCTGACCGAGATCTGCATCACTATGATGTGTCAATTACTCCTGAGATTACATCAAAGAAGGTGTGCAGAGATATAGTGAACACCTTGGTTCAGTTGTACAAAGAATCCCATCTGGGGAAGAGGCTATTAGCCTATGATGGAAGGAAAGGGGTCTACACTGCAGGGCCATTGCCTTTCACCTCCAAAGATTTTGTTGTCAAGCTCGTTGACAAAGATGGTGCAAGGAGAGACAGGGAATTTACAGTTTCAATCAAATTTGCTGCAAAAGTTGACCTCCATCATTTGCGTCAGTTCTTACAAAGTAGACAAGCCGACGCACCTCAAGAAACTATACAGGCCCTTGATGTAGTTTTGAGGGCAACACCTTCTGTCAAATATCAAGTTGTTGGAAGGTCATTCTTCTCTCCTCTATTTGAATTCGGTGAGCTTGATGGTGGTTTACATTACTGGAAGGGATTTTACCAAAGTCTACGCCCAACTCAAATGGGCCTTTCCCTTAATATTGATATGTCAGCAAGAGCCTTTTTTGAGCCCATATTGGTTTCTGAATTTGTTCAAAAATATTTTAACAAAGATCTAAACAGGCCGCTCACTGATCAAGACAGGGTTAAGGTTAAGAGAGCTCTGAAAGGAAAGTACAAGCTGGTTTTGCTTGGAGGTCTAGTGACATGCTATGTCAGTGCATTTGACAATTTACTTTTATCATTTTTTGAAAACAGATTTCCCATTGATGAATCCGGTGCGGAAGTATCAGTTATGCAATACTATCGCCAGAAGTATGACATAGTTGTTAAGTATAAATACTTACCTGCACTTAATGCAGGGACAGATGCTAATCCTGTTTTTCTGCCTATGGAGCTGAAGTATCATGAAACTGGGAAAGAGGCACGGGTTGATCCCCATGTGGGGCAATGGAACATGATCAACAAGAAAATGATTAATGGCGGTAGGGTAGACTTTTGGTCATTTGTCAACTTCTCGAGGAACAGGCCAGATATGGTTGACCAATTTTGTCAGGAATTGATTTCGATGTGTTGCAGCAAAGGAATGGTTTTCAATACGCCACCTATCCTTCCTGTTCATTCAGTGAATACTAGAAATGTTGAGAAGGTTCTTCATGACATCAACGGACAGTGCAAGGCCGAAATGAAAAGAATGGGGCATGCAGACAAGGGACTACAGCTCTTAATTGTTATATTGCCTGACGCCAGTGGGTCTTATGGGACGATCAAGCGGGTTTGTGAAACTGAGTTGGGGATTGTCTCACAGTGTTGTCAGCCCAAGCATGTATCAAGGCTTAGTAAGCAATACCTTGAAAATGTTTCTCTTAAGATTAATGTGAAGGTGGTGGCTTCAATGGATTGGCCAGAAATAACGAAGTATAGAGGATTAGTTTCAGCTCAGAATCATAGGGAAGAAATTATCCAGGATCTATACAAGAGAGAGGAAGATGCTCAAAAGGGTATTACTCACAGGGGCATGATTCGGGAGTTGTTGATTGCATTTAGGAGATCAACTGGGCACAAGCCTCATAGAATCATATTTTATAGAGATGGAGTTAGTGAAGGTCAATTCAGTCAAGTGTTGCTGTATGAGATGGATGCCATCCGAAAGGCGTGTGTCTCTTTGGAGGAGAACTATCTCCCACCTGTGACCTTTGTGGTGGTGCAAAAGAGGCACCATACCGCCTCTCTTCCTGCCAATGCTGATAGAAATAACACCGATAGGAGTGGCAACATTTTACCAGGTACCATTGTCGAGGCGAGTATTTGTCATCCAACTGAGTTTGATTTCTACCTTTGCAGCCATTCAGGTATTCAGGGAACAAGCCGTCCTACGCACTACCATGTGCTCTTTGATGAGAACAAATTCACTGCAGATGCTTTGCAAATGCTAACATACAGCCTTTGCTATACGTTTGCGAGATGTACTCGGTCGGTTTCTATTGTACCACCTGCATATTATGCGCATTTAGCAGCTTTTCGTGCACGCTACTACATTGAAGGAGACACAGAGAATGAATCCTCTAGCGGTGGTAGACCAACAAGGGACAGGACAGCAGAGGTTCGGCCACTGCCGGTGATCAAAGATAATGTGAAGGATGTCATGTTTTACTGCTGATATCAAAGATTGTTTTTTGCTTATAGTTTATACAGGGTTATGTTGGATGGCGTTTAGTATTAAGACTTCTTTTTGTAGCCTTACGGCTTATTGGTGTTTTCCTGGTGGTGATTTTGGACCACCGTTTGTTTTTTCTTCTGTTAAGCCAACCTCATCGGTAGGTACTCTTTTTGACATTTGTTTCTCAAATGTATTTAATATATTATGAGTGGCCATTTGGCCCGTTTTATTAACAATCTTATTTACTAACGTA

Network for GWHGAAZE009029

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16486.6	ArgoN	128	259	2.10E-32
PF08699.11	ArgoL1	270	317	2.60E-18
PF02170.23	PAZ	325	428	7.50E-07
PF16487.6	ArgoMid	441	517	8.00E-07
PF02171.18	Piwi	590	808	3.00E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11593	ELF2C, AGO	Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	61.418
	SRR3591706	second leaf	20.787
	SRR3591707	mature leaf	6.644
	SRR3591708	Shoot apex	28.460
	SRR3591709	Stem	58.901
	SRR3591710	White floral bud	30.012
	SRR3591711	White flower	23.259
	SRR3591712	Green floral bud	32.581
	SRR3591713	Yellow flower	4.995
SRP173429	SRR8316895	Juvenile bud stage	18.655
	SRR8316896	Juvenile bud stage	32.643
	SRR8316897	Juvenile bud stage	21.318
	SRR8316894	Third green stage	15.116
	SRR8316900	Third green stage	34.042
	SRR8316901	Third green stage	40.227
	SRR8316898	Complete white stage	4.849
	SRR8316899	Complete white stage	34.107
	SRR8316903	Complete white stage	13.639
	SRR8316902	Silver flowering stage	7.696
	SRR8316904	Silver flowering stage	8.320
	SRR8316905	Silver flowering stage	2.524
	SRR8316906	Gold flowering stage	4.108
	SRR8316907	Gold flowering stage	3.928
	SRR8316908	Gold flowering stage	5.818
SRP132670	SRR6706286	Control	31.069
	SRR6706287	Light intensity 50%	29.129
	SRR6706288	Light intensity 20%	31.991
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.020
	CNS0095593	Slightly white alabastrum(diploid) 2	35.512
	CNS0095594	Slightly white alabastrum(diploid) 3	28.282
	CNS0095595	Whole white alabastrum(diploid) 2	28.775
	CNS0095596	Whole white alabastrum(diploid) 3	21.009
	CNS0095597	Whole white alabastrum(diploid) 4	20.706
	CNS0095598	Silvery flower (diploied) 1	19.588
	CNS0095599	Silvery flower (diploied) 2	14.700
	CNS0095600	Silvery flower (diploied) 3	8.479
	CNS0095601	Golden flower (diploid) 1	14.175
	CNS0095602	Golden flower (diploid) 2	9.056
	CNS0095603	Golden flower (diploid) 3	7.092
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.010
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.950
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.704
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.180
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.159
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.732
	CNS0095610	Silvery flower (tetraploid) 1	6.478
	CNS0095611	Silvery flower (tetraploid) 2	4.884
	CNS0095612	Silvery flower (tetraploid) 3	5.786
	CNS0095613	Golden flower (tetraploid) 1	1.415
	CNS0095614	Golden flower (tetraploid) 2	2.159
	CNS0095615	Golden flower (tetraploid) 3	1.147
CRA001975	CRR073297	Stem 1	29.523
	CRR073298	Stem 2	28.361
	CRR073299	Stem 3	24.070
	CRR073300	Leaf 1	36.784
	CRR073301	Leaf 2	38.882
	CRR073302	Leaf 3	26.554
	CRR073303	Juvenile bud 1	20.933
	CRR073304	Juvenile bud 2	10.411
	CRR073305	Juvenile bud 3	30.298
	CRR073306	Third green 1	4.375
	CRR073307	Third green 2	5.721
	CRR073308	Third green 3	7.078
	CRR073309	Second white 1	3.495
	CRR073310	Second white 2	2.619
	CRR073311	Second white 3	1.666
	CRR073312	Silver flowering 1	1.390
	CRR073313	Silver flowering 2	1.846
	CRR073314	Silver flowering 3	1.961
	CRR073315	Gold flowering 1	9.096
	CRR073316	Gold flowering 2	20.824
	CRR073317	Gold flowering 3	10.365
	CRR073318	Tawny withering 1	13.622
	CRR073319	Tawny withering 2	12.521
	CRR073320	Tawny withering 3	14.292