Gene detail

Detail information of GWHGAAZE009042

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008465428.1	0	PREDICTED: uncharacterized protein LOC103503043 isoform X2 [Cucumis melo]
Swissprot	tr\|F4KBP5\|CHR4_ARATH	0.0000001	Protein CHROMATIN REMODELING 4 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|A0A0A0KBK0\|A0A0A0KBK0_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN46893.1}
TAIR10	AT2G27980.1	7E-137	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	100504952	100513656	+
GWHAAZE00000002	mRNA	100504952	100513656	+
GWHAAZE00000002	exon	100504952	100505902	+
GWHAAZE00000002	exon	100506021	100506107	+
GWHAAZE00000002	exon	100506625	100506829	+
GWHAAZE00000002	exon	100506919	100507027	+
GWHAAZE00000002	exon	100509708	100509824	+
GWHAAZE00000002	exon	100509947	100510028	+
GWHAAZE00000002	exon	100510363	100510422	+
GWHAAZE00000002	exon	100510502	100510554	+
GWHAAZE00000002	exon	100510841	100511007	+
GWHAAZE00000002	exon	100511574	100511784	+
GWHAAZE00000002	exon	100512792	100512849	+
GWHAAZE00000002	exon	100512962	100513018	+
GWHAAZE00000002	exon	100513321	100513656	+
GWHAAZE00000002	CDS	100504952	100505902	+
GWHAAZE00000002	CDS	100506021	100506107	+
GWHAAZE00000002	CDS	100506625	100506829	+
GWHAAZE00000002	CDS	100506919	100507027	+
GWHAAZE00000002	CDS	100509708	100509824	+
GWHAAZE00000002	CDS	100509947	100510028	+
GWHAAZE00000002	CDS	100510363	100510422	+
GWHAAZE00000002	CDS	100510502	100510554	+
GWHAAZE00000002	CDS	100510841	100511007	+
GWHAAZE00000002	CDS	100511574	100511784	+
GWHAAZE00000002	CDS	100512792	100512849	+
GWHAAZE00000002	CDS	100512962	100513018	+
GWHAAZE00000002	CDS	100513321	100513656	+

Transcript Sequence
>GWHTAAZE009052 ATGGCGAACGGCTCTGATTCAGGCGAATACGTAGTTTTGTCTAAGATTCGCCCTGGTTTGAAGCGAGAATTCGCCTGGGCATTGAAATCTCAATCGGAGAACAGTTCAATCGGACGGACAAGATCTCAGAATCGGCCGTTGAACGGTGGAGGTTCCGATAATCCGAGCAACAAGAGATTCAAGTCGAATGAGAGAAATAACGATAACGATGAAGAAAAGGAATCATCTAAAATGGAGACCGATTTGGAAGTAATTACGAAGGAGAATGTGGATTTGAAGAGCAATCAGGTGAGTGATATGGCCGAAAAGGTGATTTTGATAAGTGAAGGGGAGGAACAGGAACCGAAGAGCGATGTGGTGGATGTGGAGATTAATAGCGATGATGAGCGGAAGGGAAATATGGTAGAATCCGTGATTAGAGAAGAGGAATTGAAGGATACAGTGGAAAATTTAACAGAACACATTTCTAAAGAGGAACCTAAAGGTAAAATTGTAGTTTCTATTTGTAAAGAGGAAGCTAAGGATGATATTGTAGATGATATCTGTGAAGAACATTCTCAACCTGACAAGGATCAATTTGTGAACAGTGAGAATGTGGAGAATGTTGAGGTGAAATTGCCTTGCAATGAAGGGGATACAAGCACAGTACAAGCCCTAAATGTGGCTGGTGAAGGGATTGGGGATAAAATTTTACCCAAGAAACCTCGAAGGAGGTTTACGCGTTCGTCTTTGAACCCTAAGGTGCCATTGGAGGTATCAGGGAAGGAGGAATTGAATACTGAAGAGGTTGCAGAAAGTGATGCGATAAGCTCAATATATACTACAGAAAAGAAGTTGGAAATGAAAATGTCGAAGAAGATTGGTTTGAAGAGGTTTCCTACTAAGTTGAAGGATCTTCTTGACACTGGCCTGCTTGAGGGTTTACCTGTGAGGTACCTGCGCGGTGCTAAGATAAGAGGGCCGACAGAAAAGGGGCTGCGAGGAGAAATACAGGGCTCTGGGATATTGTGTTACTGTGATATGTGTGGCGGAGCTGAAGTTGTGACCCCTAACCAATTTGAGCTGCATGCGGGTAGTTCAAATAAACGTCCGCCAGAGTATATATTCTTGGAGAATGGGAACACCCTTCGCGATGTGTTGAATGCTTGCAAAGTTGCTCCACCAGAAGCACTAGAAGTGACCATAAAGCATGCGACTGGCTCTTTATCTGAAAGGGAACCTACTTTTTGTATGAATTGCAAAGGGTCAATACCTGCAGCTGGAAATGGTAAAAGAATGCTACTTTGTAATACATGCATGGTTTTAAAAGAGCCTCAACCAGGTCCCGTCCAACCAACAGATACAAGTGATAGATACATTTTATGTTCTTTATGTCTTTTGTCTAGGTTGCTGTTACCTGTTTCAGTTCCCAAGTCATCTGACCAAGTGTCTGGCAGTGCATCTCGTAGTAAGGGGAAGTTAACTCGGAAAGACTTGAGAATGCATAAATTGGTGTTTGAGGAAGATGTGCTGGCTGATGGAACCGCCTTAGCTTATTATGCTCGTGGGCAGAAATTGTTGGAGGGTTATAAGAAGGGTGCTGGAATCTTTTGCTTTTGCTGCAACACCGAGATCAGCCCTTCTCAATTTGAAGCTCATGCTGGTTGGGCTTCACGACGCAAACCTTATCTGCACATATATACATCCAATGGGGTGTCTCTTCATGAATTATCAATTGGACTAGCAAAGCAAAGGAAGTTCTCTGCAGATGAAAATGATGACCTCTGCTCCATCTGTGCAGATGGGGGGGATCTTTTGCTTTGTGATAACTGCCCCAGAGCATTTCACCCAGAGTGTGTTTCTCTGCCATTCATCCCGCAAGGCACTTGGTACTGCAAATATTGCCATAATATGTTTCTAAAGGAAAAATTTGTGGAGCGTAATGTGAACGCAGTTGCTGCTGGAAGGGTTGCCGGAATTGACCCTATAGAACAAATAACCAAGCGTTGCCTTCGTATCGTTGAAACTTCAGAAGCTGAAGTTGGTGGATGTGTGCTGTGCAGGGGACATGATTTTAACAAATCAGGATTTGGCCCAGGCACCGTAATTCTTTGTGACCAGTGTGAAAAAGAATATCATGTTGGCTGTTTAAAGGAGCACAAAATGGATGACTTAAAGGAATTGCCGAAGGGGAAGTGGTTCTGTTCCGCAGACTGCAGCAGGATTCATTCTGTCTTGCAGAAACTGGTAGCTGATGGAGGAGAAAAGCTTCCAGACTCCCTCCTGAATGTTATAAAGAAGAAGCGTGAAGAAAAAGATTCAGAAGGTAGCGTCGATCTTGATATTAGATGGAGGCTTCTTTGTGGGAAAATGCCTTCTGATGAAACTAGAGTTTTGCTTTCCAAGGCCGTTTCCATCTTCCATGTGAGTTATTTTTTGTATGTTGAACTTCTGAACCACTTGTTTCAATTTCTGATATTTTCTGTGATACTGGATGGGTTGTTTGTTAGATAA

Network for GWHGAAZE009042

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16135.6	TDBD	328	383	2.10E-16
PF16135.6	TDBD	522	570	2.70E-15
PF00628.30	PHD	589	630	1.20E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	PHD
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.971
	SRR3591706	second leaf	7.809
	SRR3591707	mature leaf	8.393
	SRR3591708	Shoot apex	9.939
	SRR3591709	Stem	8.246
	SRR3591710	White floral bud	10.651
	SRR3591711	White flower	13.080
	SRR3591712	Green floral bud	9.595
	SRR3591713	Yellow flower	10.821
SRP173429	SRR8316895	Juvenile bud stage	6.857
	SRR8316896	Juvenile bud stage	10.841
	SRR8316897	Juvenile bud stage	4.381
	SRR8316894	Third green stage	3.949
	SRR8316900	Third green stage	10.321
	SRR8316901	Third green stage	11.193
	SRR8316898	Complete white stage	3.302
	SRR8316899	Complete white stage	10.710
	SRR8316903	Complete white stage	8.400
	SRR8316902	Silver flowering stage	5.082
	SRR8316904	Silver flowering stage	8.121
	SRR8316905	Silver flowering stage	3.852
	SRR8316906	Gold flowering stage	9.671
	SRR8316907	Gold flowering stage	9.086
	SRR8316908	Gold flowering stage	9.974
SRP132670	SRR6706286	Control	8.355
	SRR6706287	Light intensity 50%	8.656
	SRR6706288	Light intensity 20%	9.005
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.430
	CNS0095593	Slightly white alabastrum(diploid) 2	4.272
	CNS0095594	Slightly white alabastrum(diploid) 3	3.647
	CNS0095595	Whole white alabastrum(diploid) 2	5.257
	CNS0095596	Whole white alabastrum(diploid) 3	2.827
	CNS0095597	Whole white alabastrum(diploid) 4	4.597
	CNS0095598	Silvery flower (diploied) 1	8.280
	CNS0095599	Silvery flower (diploied) 2	7.224
	CNS0095600	Silvery flower (diploied) 3	10.125
	CNS0095601	Golden flower (diploid) 1	7.282
	CNS0095602	Golden flower (diploid) 2	11.299
	CNS0095603	Golden flower (diploid) 3	10.614
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.815
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.070
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.331
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.426
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.036
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.604
	CNS0095610	Silvery flower (tetraploid) 1	11.684
	CNS0095611	Silvery flower (tetraploid) 2	12.147
	CNS0095612	Silvery flower (tetraploid) 3	9.931
	CNS0095613	Golden flower (tetraploid) 1	7.213
	CNS0095614	Golden flower (tetraploid) 2	10.350
	CNS0095615	Golden flower (tetraploid) 3	8.719
CRA001975	CRR073297	Stem 1	12.756
	CRR073298	Stem 2	10.713
	CRR073299	Stem 3	8.971
	CRR073300	Leaf 1	12.166
	CRR073301	Leaf 2	9.397
	CRR073302	Leaf 3	5.976
	CRR073303	Juvenile bud 1	8.276
	CRR073304	Juvenile bud 2	5.261
	CRR073305	Juvenile bud 3	8.976
	CRR073306	Third green 1	3.961
	CRR073307	Third green 2	3.242
	CRR073308	Third green 3	3.985
	CRR073309	Second white 1	3.455
	CRR073310	Second white 2	7.070
	CRR073311	Second white 3	6.071
	CRR073312	Silver flowering 1	5.999
	CRR073313	Silver flowering 2	7.854
	CRR073314	Silver flowering 3	5.688
	CRR073315	Gold flowering 1	3.431
	CRR073316	Gold flowering 2	5.920
	CRR073317	Gold flowering 3	2.730
	CRR073318	Tawny withering 1	6.984
	CRR073319	Tawny withering 2	6.869
	CRR073320	Tawny withering 3	5.916