Gene detail

Detail information of GWHGAAZE009046

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011088800.1	6.72591E-93	PREDICTED: 50S ribosomal protein L9, chloroplastic [Sesamum indicum]
Swissprot	tr\|P25864\|RK9_ARATH	1E-86	50S ribosomal protein L9, chloroplastic (Precursor)
trEMBL	tr\|C6T1L0\|C6T1L0_SOYBN	2E-89	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU15460.1}
TAIR10	AT3G44890.1	4E-58	ribosomal protein L9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	100593350	100598631	+
GWHAAZE00000002	mRNA	100593350	100598631	+
GWHAAZE00000002	exon	100593350	100593633	+
GWHAAZE00000002	exon	100593763	100593890	+
GWHAAZE00000002	exon	100597173	100597218	+
GWHAAZE00000002	exon	100597723	100597820	+
GWHAAZE00000002	exon	100597912	100597959	+
GWHAAZE00000002	exon	100598511	100598631	+
GWHAAZE00000002	five_prime_UTR	100593350	100593474	+
GWHAAZE00000002	CDS	100593475	100593633	+
GWHAAZE00000002	CDS	100593763	100593890	+
GWHAAZE00000002	CDS	100597173	100597218	+
GWHAAZE00000002	CDS	100597723	100597820	+
GWHAAZE00000002	CDS	100597912	100597959	+
GWHAAZE00000002	CDS	100598511	100598631	+

Transcript Sequence
>GWHTAAZE009056 TATCCGTCTTATTACCCTTTCTACATTTCACCTTTGGATAAGATACAGAATTACAGATAGTAGCAGCACACTGAACCAAAAGATAACGAAAATACAGAGGGAGTAAAGGAGAGAAAAGAGCGGCAATGGCCTCAACAGCATCAACTCTCTCATGGAATTCATCCTCATGGTTCCAAAATCACTTATCACCCAAAACCCTGAACCCAACCACCACAACCAAGCCCTCTCAAAGATGCCCAAATTTCCAGATTTTGGCTCAAAAGAAAGTCAAGAAAGTCCGAAAGATAATACTAAAAGAGGACGTGGTTGATGTGGGGAAAAAAGGGGACCTTGCGGATGTTAGAGCTGGGTTTTATAGGAATTTTCTTCTTCCCACTGGAAAGGCACAGATAGTTACCCCCCTCCTTATCAAGGAAATGAAGCTGGAAAAGGAGAGAATTGAGGCTGAGAAGCAAAGGGTGAAAGATGAGGCACAACAGCTTGCTCGAATTTTTGAAACTGTTGGAGCTTTCAAAGTGAAGCGCAAGAGCGGGAAAGGAAAGCAAATTTTTGGAAGTGTTACTGCTCAAGATCTTGTTGACATAATCAAAGCACAGCTACAAAGGGAGGTGGACAAACGAGTTGTTACTGTACCAGAAATCCGAGAAACTGGCGAGTACATCGCAGAGTTGAAGCTTCATCCCGAAGTTACTGCTCAAGTGAGGTTGATTGTATTTGCAAACTAA

Network for GWHGAAZE009046

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01281.20	Ribosomal_L9_N	53	98	3.80E-15
PF03948.15	Ribosomal_L9_C	115	196	2.50E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02939	RP-L9, MRPL9, rplI	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	100.290
	SRR3591706	second leaf	227.792
	SRR3591707	mature leaf	144.940
	SRR3591708	Shoot apex	193.840
	SRR3591709	Stem	44.207
	SRR3591710	White floral bud	53.457
	SRR3591711	White flower	60.426
	SRR3591712	Green floral bud	71.748
	SRR3591713	Yellow flower	67.344
SRP173429	SRR8316895	Juvenile bud stage	57.836
	SRR8316896	Juvenile bud stage	57.055
	SRR8316897	Juvenile bud stage	40.559
	SRR8316894	Third green stage	26.489
	SRR8316900	Third green stage	93.185
	SRR8316901	Third green stage	83.446
	SRR8316898	Complete white stage	26.957
	SRR8316899	Complete white stage	73.485
	SRR8316903	Complete white stage	30.240
	SRR8316902	Silver flowering stage	27.869
	SRR8316904	Silver flowering stage	32.911
	SRR8316905	Silver flowering stage	19.126
	SRR8316906	Gold flowering stage	56.835
	SRR8316907	Gold flowering stage	63.021
	SRR8316908	Gold flowering stage	51.941
SRP132670	SRR6706286	Control	109.414
	SRR6706287	Light intensity 50%	114.919
	SRR6706288	Light intensity 20%	128.393
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	41.916
	CNS0095593	Slightly white alabastrum(diploid) 2	38.829
	CNS0095594	Slightly white alabastrum(diploid) 3	32.211
	CNS0095595	Whole white alabastrum(diploid) 2	37.093
	CNS0095596	Whole white alabastrum(diploid) 3	44.601
	CNS0095597	Whole white alabastrum(diploid) 4	29.124
	CNS0095598	Silvery flower (diploied) 1	62.086
	CNS0095599	Silvery flower (diploied) 2	67.006
	CNS0095600	Silvery flower (diploied) 3	60.882
	CNS0095601	Golden flower (diploid) 1	61.265
	CNS0095602	Golden flower (diploid) 2	56.467
	CNS0095603	Golden flower (diploid) 3	59.143
	CNS0095604	Slightly white alabastrum(tetraploid) 1	48.281
	CNS0095605	Slightly white alabastrum(tetraploid) 2	48.450
	CNS0095606	Slightly white alabastrum(tetraploid) 3	76.657
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.981
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.664
	CNS0095609	Whole white alabastrum(tetraploid) 3	88.356
	CNS0095610	Silvery flower (tetraploid) 1	46.992
	CNS0095611	Silvery flower (tetraploid) 2	77.897
	CNS0095612	Silvery flower (tetraploid) 3	61.866
	CNS0095613	Golden flower (tetraploid) 1	28.698
	CNS0095614	Golden flower (tetraploid) 2	37.025
	CNS0095615	Golden flower (tetraploid) 3	32.336
CRA001975	CRR073297	Stem 1	87.559
	CRR073298	Stem 2	80.180
	CRR073299	Stem 3	97.137
	CRR073300	Leaf 1	60.257
	CRR073301	Leaf 2	63.335
	CRR073302	Leaf 3	86.300
	CRR073303	Juvenile bud 1	71.928
	CRR073304	Juvenile bud 2	87.780
	CRR073305	Juvenile bud 3	44.856
	CRR073306	Third green 1	52.319
	CRR073307	Third green 2	35.338
	CRR073308	Third green 3	40.893
	CRR073309	Second white 1	40.816
	CRR073310	Second white 2	42.755
	CRR073311	Second white 3	34.383
	CRR073312	Silver flowering 1	25.963
	CRR073313	Silver flowering 2	19.075
	CRR073314	Silver flowering 3	25.124
	CRR073315	Gold flowering 1	226.704
	CRR073316	Gold flowering 2	270.520
	CRR073317	Gold flowering 3	161.485
	CRR073318	Tawny withering 1	30.689
	CRR073319	Tawny withering 2	40.526
	CRR073320	Tawny withering 3	37.346