Detail information of GWHGAAZE009049


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrO04997.1SODCP_SOLCS7.1211E-108RecName: Full=Superoxide dismutase [Cu-Zn], chloroplastic; Flags: Precursor [Solidago canadensis var. scabra]
Swissprottr|O04997|SODCP_SOLCS3E-110Superoxide dismutase [Cu-Zn], chloroplastic (Precursor)
trEMBLtr|G3E253|G3E253_SCUBA1E-102Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393}
TAIR10AT2G28190.11E-65copper/zinc superoxide dismutase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene100693222100696008-
GWHAAZE00000002mRNA100693222100696008-
GWHAAZE00000002exon100693222100693286-
GWHAAZE00000002exon100693591100693644-
GWHAAZE00000002exon100693835100693910-
GWHAAZE00000002exon100694245100694276-
GWHAAZE00000002exon100694633100694728-
GWHAAZE00000002exon100694960100694999-
GWHAAZE00000002exon100695106100695167-
GWHAAZE00000002exon100695729100696008-
GWHAAZE00000002CDS100695729100696008-
GWHAAZE00000002CDS100695106100695167-
GWHAAZE00000002CDS100694960100694999-
GWHAAZE00000002CDS100694633100694728-
GWHAAZE00000002CDS100694245100694276-
GWHAAZE00000002CDS100693835100693910-
GWHAAZE00000002CDS100693591100693644-
GWHAAZE00000002CDS100693222100693286-
Transcript Sequence

Network for GWHGAAZE009049

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00080.21Sod_Cu792131.10E-44
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04565SOD1 Peroxisome map04146
Longevity regulating pathway - multiple speciesmap04213

Gene Ontology

GO term OntologyName
GO:0006801biological_processsuperoxide metabolic process
GO:0055114biological_processoxidation-reduction process
GO:0046872molecular_functionmetal ion binding
GO:0004784molecular_functionsuperoxide dismutase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE009049.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30255075100125150175200225250275300325350Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf109.576
SRR3591706second leaf310.842
SRR3591707mature leaf105.287
SRR3591708Shoot apex251.980
SRR3591709Stem41.456
SRR3591710White floral bud110.585
SRR3591711White flower114.492
SRR3591712Green floral bud148.637
SRR3591713Yellow flower105.173
SRP173429 SRR8316895Juvenile bud stage 102.965
SRR8316896Juvenile bud stage 93.668
SRR8316897Juvenile bud stage 86.417
SRR8316894Third green stage 52.103
SRR8316900Third green stage 190.046
SRR8316901Third green stage 166.913
SRR8316898Complete white stage 61.155
SRR8316899Complete white stage 164.455
SRR8316903Complete white stage 82.428
SRR8316902Silver flowering stage78.450
SRR8316904Silver flowering stage82.314
SRR8316905Silver flowering stage60.938
SRR8316906Gold flowering stage 175.717
SRR8316907Gold flowering stage 179.346
SRR8316908Gold flowering stage 174.094
SRP132670SRR6706286Control115.277
SRR6706287Light intensity 50%156.226
SRR6706288Light intensity 20%187.207
CNP0000432CNS0095592Slightly white alabastrum(diploid) 198.978
CNS0095593Slightly white alabastrum(diploid) 277.177
CNS0095594Slightly white alabastrum(diploid) 368.890
CNS0095595Whole white alabastrum(diploid) 284.075
CNS0095596Whole white alabastrum(diploid) 381.854
CNS0095597Whole white alabastrum(diploid) 478.392
CNS0095598Silvery flower (diploied) 183.875
CNS0095599Silvery flower (diploied) 279.702
CNS0095600Silvery flower (diploied) 3142.821
CNS0095601Golden flower (diploid) 185.570
CNS0095602Golden flower (diploid) 299.997
CNS0095603Golden flower (diploid) 397.535
CNS0095604Slightly white alabastrum(tetraploid) 189.293
CNS0095605Slightly white alabastrum(tetraploid) 274.476
CNS0095606Slightly white alabastrum(tetraploid) 3131.274
CNS0095607Whole white alabastrum(tetraploid) 142.888
CNS0095608Whole white alabastrum(tetraploid) 257.236
CNS0095609Whole white alabastrum(tetraploid) 3115.796
CNS0095610Silvery flower (tetraploid) 1100.614
CNS0095611Silvery flower (tetraploid) 2152.303
CNS0095612Silvery flower (tetraploid) 3151.517
CNS0095613Golden flower (tetraploid) 159.360
CNS0095614Golden flower (tetraploid) 291.831
CNS0095615Golden flower (tetraploid) 3196.612
CRA001975CRR073297Stem 1145.642
CRR073298Stem 2143.643
CRR073299Stem 3189.178
CRR073300Leaf 1139.084
CRR073301Leaf 2122.216
CRR073302Leaf 3139.323
CRR073303Juvenile bud 1158.744
CRR073304Juvenile bud 2194.012
CRR073305Juvenile bud 3153.144
CRR073306Third green 1186.545
CRR073307Third green 2148.850
CRR073308Third green 3122.942
CRR073309Second white 1182.890
CRR073310Second white 2102.149
CRR073311Second white 369.420
CRR073312Silver flowering 186.345
CRR073313Silver flowering 2118.499
CRR073314Silver flowering 376.030
CRR073315Gold flowering 186.472
CRR073316Gold flowering 2110.704
CRR073317Gold flowering 3172.563
CRR073318Tawny withering 144.320
CRR073319Tawny withering 234.092
CRR073320Tawny withering 338.677