Gene detail

Detail information of GWHGAAZE009053

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006424449.1	1.7269E-93	hypothetical protein CICLE_v10028942mg [Citrus clementina]
trEMBL	tr\|V4UEG5\|V4UEG5_9ROSI	6E-94	Uncharacterized protein {ECO:0000313\|EMBL:ESR37689.1}
TAIR10	AT5G22920.1	1E-71	CHY-type/CTCHY-type/RING-type Zinc finger protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	100779409	100784313	+
GWHAAZE00000002	mRNA	100779409	100784313	+
GWHAAZE00000002	exon	100779409	100779491	+
GWHAAZE00000002	exon	100779645	100779732	+
GWHAAZE00000002	exon	100779854	100779913	+
GWHAAZE00000002	exon	100782298	100782330	+
GWHAAZE00000002	exon	100782667	100782744	+
GWHAAZE00000002	exon	100782837	100782879	+
GWHAAZE00000002	exon	100783277	100783317	+
GWHAAZE00000002	exon	100783415	100783497	+
GWHAAZE00000002	exon	100783584	100783703	+
GWHAAZE00000002	exon	100783954	100784023	+
GWHAAZE00000002	exon	100784260	100784313	+
GWHAAZE00000002	CDS	100779409	100779491	+
GWHAAZE00000002	CDS	100779645	100779732	+
GWHAAZE00000002	CDS	100779854	100779913	+
GWHAAZE00000002	CDS	100782298	100782330	+
GWHAAZE00000002	CDS	100782667	100782744	+
GWHAAZE00000002	CDS	100782837	100782879	+
GWHAAZE00000002	CDS	100783277	100783317	+
GWHAAZE00000002	CDS	100783415	100783497	+
GWHAAZE00000002	CDS	100783584	100783703	+
GWHAAZE00000002	CDS	100783954	100784023	+
GWHAAZE00000002	CDS	100784260	100784313	+

Transcript Sequence
>GWHTAAZE009063 ATGGGGAGTGAAATTGAGTCTCAAATATCTCTTTTGGGTGATGAACACAAGTCTTTAATGGAGCCTGTCTCTCAAAATTATGGGTGTATTCATTACAAGAGGAGATGCAAGATCAGAGCCCCATGTTGTGATGAAATCTTTGACTGCAGGCATTGTCATAATGAAGCTAAGGACACGCTAGAAGTTAATCCTATGCATCGCCATGAGATTCCGCGCCACGAAATTAAAACGGTTATATGTTCCCTATGTGGCACAGAACAAGATGTTCAACAAAACTGTAGAAATTGTGGGGTTTGCATGGGGAAGTACTTTTGTGCTAAATGCAACTTCTTTGATGATGATGTTTCAAAAACCAGTACCACTGTGATGAATGTGGAATATGCAGAACTGGAGGCAAAGAGAATTTCTTTCATTGCAAAAAGTGTGGATGTTGCTATTCAAAATCAATCAAGGATTCACACCATTGTGTGGAAAGAGCAATGCACCATAATTGTCCTGTTTGCTTTGAGGGATGAGTTCTTGCATTTGAACTTGCAGTTTTTATTTGATACAATGAAAGAGACAACTGTTTTACTATGTGGGCATACGATTCATGTGGAATGCGTAAGAGAGATGGAGCTACACTACCGGTACTCATGCCCTGTTTGCTCAAAATCGATATGTGATTTGTCCAACTTGTGGGAAAAGATCGATAAAGAGGTTGCTTCAACTCCAATGCCCGAGATGTACAAAAACAAGATGGTAAGCTTATAA

Network for GWHGAAZE009053

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05495.13	zf-CHY	29	110	1.90E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10144	RCHY1, PIRH2	Ubiquitin mediated proteolysis	map04120
K10144	RCHY1, PIRH2	p53 signaling pathway	map04115

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.174
	SRR3591706	second leaf	0.806
	SRR3591707	mature leaf	1.996
	SRR3591708	Shoot apex	28.252
	SRR3591709	Stem	5.796
	SRR3591710	White floral bud	12.308
	SRR3591711	White flower	17.708
	SRR3591712	Green floral bud	1.037
	SRR3591713	Yellow flower	119.606
SRP173429	SRR8316895	Juvenile bud stage	1.203
	SRR8316896	Juvenile bud stage	1.492
	SRR8316897	Juvenile bud stage	5.927
	SRR8316894	Third green stage	0.094
	SRR8316900	Third green stage	0.673
	SRR8316901	Third green stage	0.394
	SRR8316898	Complete white stage	2.630
	SRR8316899	Complete white stage	0.479
	SRR8316903	Complete white stage	6.145
	SRR8316902	Silver flowering stage	10.495
	SRR8316904	Silver flowering stage	10.987
	SRR8316905	Silver flowering stage	6.551
	SRR8316906	Gold flowering stage	37.293
	SRR8316907	Gold flowering stage	32.615
	SRR8316908	Gold flowering stage	24.866
SRP132670	SRR6706286	Control	0.552
	SRR6706287	Light intensity 50%	0.372
	SRR6706288	Light intensity 20%	0.153
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.764
	CNS0095593	Slightly white alabastrum(diploid) 2	1.279
	CNS0095594	Slightly white alabastrum(diploid) 3	1.364
	CNS0095595	Whole white alabastrum(diploid) 2	0.458
	CNS0095596	Whole white alabastrum(diploid) 3	0.785
	CNS0095597	Whole white alabastrum(diploid) 4	1.517
	CNS0095598	Silvery flower (diploied) 1	15.821
	CNS0095599	Silvery flower (diploied) 2	10.645
	CNS0095600	Silvery flower (diploied) 3	23.185
	CNS0095601	Golden flower (diploid) 1	32.713
	CNS0095602	Golden flower (diploid) 2	52.990
	CNS0095603	Golden flower (diploid) 3	51.738
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.314
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.990
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.563
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.634
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.043
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.237
	CNS0095610	Silvery flower (tetraploid) 1	45.452
	CNS0095611	Silvery flower (tetraploid) 2	48.155
	CNS0095612	Silvery flower (tetraploid) 3	14.897
	CNS0095613	Golden flower (tetraploid) 1	66.220
	CNS0095614	Golden flower (tetraploid) 2	51.173
	CNS0095615	Golden flower (tetraploid) 3	168.405
CRA001975	CRR073297	Stem 1	4.230
	CRR073298	Stem 2	3.232
	CRR073299	Stem 3	3.859
	CRR073300	Leaf 1	1.704
	CRR073301	Leaf 2	1.010
	CRR073302	Leaf 3	0.552
	CRR073303	Juvenile bud 1	0.206
	CRR073304	Juvenile bud 2	1.500
	CRR073305	Juvenile bud 3	0.682
	CRR073306	Third green 1	0.102
	CRR073307	Third green 2	0.458
	CRR073308	Third green 3	0.782
	CRR073309	Second white 1	0.077
	CRR073310	Second white 2	0.503
	CRR073311	Second white 3	0.660
	CRR073312	Silver flowering 1	1.379
	CRR073313	Silver flowering 2	0.466
	CRR073314	Silver flowering 3	1.893
	CRR073315	Gold flowering 1	1.831
	CRR073316	Gold flowering 2	2.106
	CRR073317	Gold flowering 3	0.754
	CRR073318	Tawny withering 1	2.102
	CRR073319	Tawny withering 2	1.169
	CRR073320	Tawny withering 3	3.040