Gene detail

Detail information of GWHGAAZE009056

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP43965.1	1.0098E-140	hypothetical protein JCGZ_05432 [Jatropha curcas]
trEMBL	tr\|A0A067LH90\|A0A067LH90_JATCU	4E-141	Uncharacterized protein {ECO:0000313\|EMBL:KDP43965.1}
TAIR10	AT5G22920.1	2E-98	CHY-type/CTCHY-type/RING-type Zinc finger protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	100839826	100843744	+
GWHAAZE00000002	mRNA	100839826	100843744	+
GWHAAZE00000002	exon	100839826	100839944	+
GWHAAZE00000002	exon	100840098	100840185	+
GWHAAZE00000002	exon	100840307	100840366	+
GWHAAZE00000002	exon	100840854	100840886	+
GWHAAZE00000002	exon	100841238	100841315	+
GWHAAZE00000002	exon	100841408	100841451	+
GWHAAZE00000002	exon	100841852	100841892	+
GWHAAZE00000002	exon	100841990	100842072	+
GWHAAZE00000002	exon	100842187	100842327	+
GWHAAZE00000002	exon	100843128	100843169	+
GWHAAZE00000002	exon	100843583	100843744	+
GWHAAZE00000002	CDS	100839826	100839944	+
GWHAAZE00000002	CDS	100840098	100840185	+
GWHAAZE00000002	CDS	100840307	100840366	+
GWHAAZE00000002	CDS	100840854	100840886	+
GWHAAZE00000002	CDS	100841238	100841315	+
GWHAAZE00000002	CDS	100841408	100841451	+
GWHAAZE00000002	CDS	100841852	100841892	+
GWHAAZE00000002	CDS	100841990	100842072	+
GWHAAZE00000002	CDS	100842187	100842327	+
GWHAAZE00000002	CDS	100843128	100843169	+
GWHAAZE00000002	CDS	100843583	100843744	+

Transcript Sequence
>GWHTAAZE009066 ATAAAAGAACAGAGATTGTTGAAAAATCTGAAGAGAATGGGGAGTGAAATTGAGTCTCAAATATCTCTTTTGGGTGATGAACACAAGTCTTTAATGGAGCCTGTCTCTCAAAACTATGGGTGTATTCATTACAAGAGGAGATGCAAGATCAGAGCCCCATGTTGTGATGAAATCTTTGACTGCAGGCATTGTCATAATGAAGCTAAGGACACGCTAGAAGTTAATCCTATGCATCGCCATGAGATTCCGCGCCACGAAATTAAAACGGTTATATGTTCCCTATGTGGCACAGAACAAGATGTTCAACAAAACTGTAGAAATTGTGGGGTTTGCATGGGGAAGTACTTTTGTGCTAAATGCAACTTCTTTGATGATGATGTTTCAAAAAACCAGTACCACTGTGATGAATGTGGAATATGCAGAACTGGAGGCAAAGAGAATTTCTTTCATTGCAAAAAGTGTGGATGTTGCTATTCAAAATCAATCAAGGATTCACACCATTGTGTGGAAAGAGCAATGCACCATAATTGTCCTGTTTGCTTTGAGTTTTTATTTGATACAATGAAAGAGACAACTGTTTTACTATGTGGGCATACGATTCATGTGGAATGCGTAGAGAGATGGAGCTACACTACCGGTAAGTATCGAATAAACCACATAAAAGCCTCACTTTTATTAAGAAAGAAAGTTGCTTCAACTCCAATGCCAGAGATGTACAAAAACAAGATGGTGTGGATCCTTTGCAATGATTGCGAGGAAACATCAGAGGTACATTTTCATATAGTGGGACACAAATGCCTGAGATGCAAGTCCTACAACACTAGGCAAATAAGAGGAGGCCCTTCTTCTTCTTCTTCATGCACATCAACAATTTCTGAAATTGTTGGATGA

Network for GWHGAAZE009056

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05495.13	zf-CHY	41	122	2.70E-18
PF13445.7	zf-RING_UBOX	177	208	1.00E-05
PF14599.7	zinc_ribbon_6	226	275	3.10E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10144	RCHY1, PIRH2	Ubiquitin mediated proteolysis	map04120
K10144	RCHY1, PIRH2	p53 signaling pathway	map04115

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.598
	SRR3591706	second leaf	0.613
	SRR3591707	mature leaf	3.187
	SRR3591708	Shoot apex	27.351
	SRR3591709	Stem	3.516
	SRR3591710	White floral bud	8.298
	SRR3591711	White flower	12.619
	SRR3591712	Green floral bud	0.606
	SRR3591713	Yellow flower	96.467
SRP173429	SRR8316895	Juvenile bud stage	1.691
	SRR8316896	Juvenile bud stage	2.510
	SRR8316897	Juvenile bud stage	8.106
	SRR8316894	Third green stage	0.328
	SRR8316900	Third green stage	0.510
	SRR8316901	Third green stage	0.780
	SRR8316898	Complete white stage	3.519
	SRR8316899	Complete white stage	0.975
	SRR8316903	Complete white stage	5.626
	SRR8316902	Silver flowering stage	10.508
	SRR8316904	Silver flowering stage	12.765
	SRR8316905	Silver flowering stage	11.213
	SRR8316906	Gold flowering stage	54.819
	SRR8316907	Gold flowering stage	43.450
	SRR8316908	Gold flowering stage	41.566
SRP132670	SRR6706286	Control	0.882
	SRR6706287	Light intensity 50%	0.427
	SRR6706288	Light intensity 20%	0.124
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.561
	CNS0095593	Slightly white alabastrum(diploid) 2	3.037
	CNS0095594	Slightly white alabastrum(diploid) 3	3.036
	CNS0095595	Whole white alabastrum(diploid) 2	1.353
	CNS0095596	Whole white alabastrum(diploid) 3	0.797
	CNS0095597	Whole white alabastrum(diploid) 4	1.775
	CNS0095598	Silvery flower (diploied) 1	21.147
	CNS0095599	Silvery flower (diploied) 2	14.070
	CNS0095600	Silvery flower (diploied) 3	30.344
	CNS0095601	Golden flower (diploid) 1	36.031
	CNS0095602	Golden flower (diploid) 2	61.205
	CNS0095603	Golden flower (diploid) 3	59.917
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.363
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.971
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.214
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.822
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.765
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.411
	CNS0095610	Silvery flower (tetraploid) 1	61.675
	CNS0095611	Silvery flower (tetraploid) 2	66.830
	CNS0095612	Silvery flower (tetraploid) 3	18.807
	CNS0095613	Golden flower (tetraploid) 1	77.953
	CNS0095614	Golden flower (tetraploid) 2	71.313
	CNS0095615	Golden flower (tetraploid) 3	241.372
CRA001975	CRR073297	Stem 1	6.301
	CRR073298	Stem 2	4.237
	CRR073299	Stem 3	3.200
	CRR073300	Leaf 1	1.358
	CRR073301	Leaf 2	0.769
	CRR073302	Leaf 3	0.266
	CRR073303	Juvenile bud 1	0.575
	CRR073304	Juvenile bud 2	0.889
	CRR073305	Juvenile bud 3	0.581
	CRR073306	Third green 1	0.354
	CRR073307	Third green 2	0.264
	CRR073308	Third green 3	0.205
	CRR073309	Second white 1	0.007
	CRR073310	Second white 2	0.534
	CRR073311	Second white 3	0.981
	CRR073312	Silver flowering 1	2.033
	CRR073313	Silver flowering 2	0.574
	CRR073314	Silver flowering 3	1.040
	CRR073315	Gold flowering 1	1.207
	CRR073316	Gold flowering 2	3.858
	CRR073317	Gold flowering 3	1.491
	CRR073318	Tawny withering 1	1.818
	CRR073319	Tawny withering 2	1.157
	CRR073320	Tawny withering 3	5.211