Gene detail

Detail information of GWHGAAZE009068

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009619509.1	1.4352E-115	PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9FFB3\|VP241_ARATH	1E-102	Vacuolar protein sorting-associated protein 24 homolog 1
trEMBL	tr\|K4D9N4\|K4D9N4_SOLLC	3E-115	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc11g066260.1.1}
TAIR10	AT5G22950.1	6E-82	SNF7 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	101155013	101161367	+
GWHAAZE00000002	mRNA	101155013	101161367	+
GWHAAZE00000002	exon	101155013	101155368	+
GWHAAZE00000002	exon	101155496	101155572	+
GWHAAZE00000002	exon	101157176	101157278	+
GWHAAZE00000002	exon	101159781	101159956	+
GWHAAZE00000002	exon	101161110	101161367	+
GWHAAZE00000002	five_prime_UTR	101155013	101155256	+
GWHAAZE00000002	CDS	101155257	101155368	+
GWHAAZE00000002	CDS	101155496	101155572	+
GWHAAZE00000002	CDS	101157176	101157278	+
GWHAAZE00000002	CDS	101159781	101159956	+
GWHAAZE00000002	CDS	101161110	101161325	+
GWHAAZE00000002	three_prime_UTR	101161326	101161367	+

Transcript Sequence
>GWHTAAZE009078 CGCGCCTTCTCCCGCGGCCCCTCTTCATCCGTTTTCCTCTTTGTTATAGAAAAACAAAAACTTTCCCCTCTATAGAAATTCCGTTGATTACAAAATGCGATCTTACACAACAGAAAAAAGAGCATCCAAAATTCATCATCAATATCAAAGAAAAGATTGAAGGATCAGATCGTCGACAATCGAATCTCGTATTGGATAGCGAAGTTTCATCGTCATCGTTCTTGATTTTGATTAAAGAGAGGAGATGGAGAAAGTAAGGAATATTTTGAAGCCAAAAGCGAACCCACAGCAACAGATGAGAGATTGGCAGCGTAAGCTCCGTCAAGAATGCCGCAACATTGAACGTCAAATCCGAGATATACAGAGAGAAGAGAAGAATGTACAGAAAGCAATTAAAGAAGCTGCAAAGAGAAATGACATGGGCTCTGCTAAGTCACTGGCTAAAGAAATTGTGAGATCTAGAAGAACTGTGAACCGTCTCTATGAAAATAAGGCACAGTTGAATTCAATATCAATGCACCTCGGAGAAAGTGTTGCTGTTGCCCGTACGGTTGGACATTTATCCAAGAGTGCTGAAGTAATGAAACTTGTAAATAACCTTATGAAGGCTCCAGAAATAGCTGTCACTATGCAAGAATTCAGCAAAGAAATGACCAAGGTACCCTTTTCTTTTCTTTTTTAGTCTTTCCTCGCAGCAAAAGAATCAATTGGGGCTGGCGTGATCGAAGAGATGGTGAGCGATGCAGTTGACTCAGCACTGGATTCAGAGGACATAGAAGAGGAGACCGAAGAGGAAGTTGATAAGGTGTTGGCAGCGATAGCCGGTGAGACTGCTGCACAGCTTCCTGAAGCAGTCAGGAAGGAGCGCCTAAAGCAACCTGCACAGGCATCCCAGGATGCAGAGGTACATGTGCAACGCATGACATGACATGACATGCATCTTTTCTCCTCCATTTGCTTCCTTTTTTTT

Network for GWHGAAZE009068

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03357.22	Snf7	21	138	1.90E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12193	VPS24, CHMP3	Endocytosis	map04144
K12193	VPS24, CHMP3	Necroptosis	map04217

Gene Ontology

GO term	Ontology	Name
GO:0007034	biological_process	vacuolar transport

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.940
	SRR3591706	second leaf	14.551
	SRR3591707	mature leaf	25.676
	SRR3591708	Shoot apex	22.227
	SRR3591709	Stem	48.036
	SRR3591710	White floral bud	55.449
	SRR3591711	White flower	68.415
	SRR3591712	Green floral bud	35.971
	SRR3591713	Yellow flower	54.915
SRP173429	SRR8316895	Juvenile bud stage	47.911
	SRR8316896	Juvenile bud stage	67.158
	SRR8316897	Juvenile bud stage	44.275
	SRR8316894	Third green stage	18.534
	SRR8316900	Third green stage	52.545
	SRR8316901	Third green stage	60.914
	SRR8316898	Complete white stage	29.274
	SRR8316899	Complete white stage	93.907
	SRR8316903	Complete white stage	41.417
	SRR8316902	Silver flowering stage	32.812
	SRR8316904	Silver flowering stage	37.176
	SRR8316905	Silver flowering stage	18.838
	SRR8316906	Gold flowering stage	62.920
	SRR8316907	Gold flowering stage	59.490
	SRR8316908	Gold flowering stage	67.768
SRP132670	SRR6706286	Control	78.887
	SRR6706287	Light intensity 50%	77.484
	SRR6706288	Light intensity 20%	78.980
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	44.751
	CNS0095593	Slightly white alabastrum(diploid) 2	63.991
	CNS0095594	Slightly white alabastrum(diploid) 3	49.845
	CNS0095595	Whole white alabastrum(diploid) 2	52.623
	CNS0095596	Whole white alabastrum(diploid) 3	35.733
	CNS0095597	Whole white alabastrum(diploid) 4	44.482
	CNS0095598	Silvery flower (diploied) 1	53.583
	CNS0095599	Silvery flower (diploied) 2	51.407
	CNS0095600	Silvery flower (diploied) 3	56.104
	CNS0095601	Golden flower (diploid) 1	45.325
	CNS0095602	Golden flower (diploid) 2	56.510
	CNS0095603	Golden flower (diploid) 3	56.751
	CNS0095604	Slightly white alabastrum(tetraploid) 1	44.483
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.716
	CNS0095606	Slightly white alabastrum(tetraploid) 3	59.831
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.251
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.591
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.569
	CNS0095610	Silvery flower (tetraploid) 1	57.983
	CNS0095611	Silvery flower (tetraploid) 2	57.717
	CNS0095612	Silvery flower (tetraploid) 3	43.908
	CNS0095613	Golden flower (tetraploid) 1	48.932
	CNS0095614	Golden flower (tetraploid) 2	45.097
	CNS0095615	Golden flower (tetraploid) 3	47.356
CRA001975	CRR073297	Stem 1	67.079
	CRR073298	Stem 2	58.766
	CRR073299	Stem 3	63.465
	CRR073300	Leaf 1	72.642
	CRR073301	Leaf 2	75.492
	CRR073302	Leaf 3	62.128
	CRR073303	Juvenile bud 1	70.440
	CRR073304	Juvenile bud 2	54.638
	CRR073305	Juvenile bud 3	52.553
	CRR073306	Third green 1	36.729
	CRR073307	Third green 2	35.159
	CRR073308	Third green 3	33.319
	CRR073309	Second white 1	20.051
	CRR073310	Second white 2	41.993
	CRR073311	Second white 3	31.730
	CRR073312	Silver flowering 1	24.824
	CRR073313	Silver flowering 2	26.980
	CRR073314	Silver flowering 3	27.519
	CRR073315	Gold flowering 1	27.845
	CRR073316	Gold flowering 2	50.371
	CRR073317	Gold flowering 3	21.295
	CRR073318	Tawny withering 1	79.386
	CRR073319	Tawny withering 2	95.455
	CRR073320	Tawny withering 3	79.368