Gene detail

Detail information of GWHGAAZE009072

Functional Annotation

Database	Orthologs	Annotation
Nr	EYU37042.1	hypothetical protein MIMGU_mgv1a004219mg [Erythranthe guttata]
Swissprot	tr\|Q8GW72\|FUCO1_ARATH	Alpha-L-fucosidase 1 (Precursor)
trEMBL	tr\|A0A022R9N6\|A0A022R9N6_ERYGU	Uncharacterized protein {ECO:0000313\|EMBL:EYU37042.1}
TAIR10	AT2G28100.1	alpha-L-fucosidase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	101247041	101251420	+
GWHAAZE00000002	mRNA	101247041	101251420	+
GWHAAZE00000002	exon	101247041	101247407	+
GWHAAZE00000002	exon	101247812	101248049	+
GWHAAZE00000002	exon	101249509	101249745	+
GWHAAZE00000002	exon	101250649	101251420	+
GWHAAZE00000002	CDS	101247041	101247407	+
GWHAAZE00000002	CDS	101247812	101248049	+
GWHAAZE00000002	CDS	101249509	101249745	+
GWHAAZE00000002	CDS	101250649	101251420	+

Transcript Sequence
>GWHTAAZE009082 ATGAAAACCCAACAAACACCTCATATTCACAAATCCAATACCAATCTCCACAAATCCAAACAACCCATTTACCAAATCCTCATTTTAATCCTCACCCTAATTCTCTCCCAATTCCAACCTTCCCATGCTTCCCCCAAACCACCTCCAATTCCAATTTTGCCCATCCCATCTTCACAGCAACTTCAATGGCAGCTCTCAGAGATGGCCCTCTTCCTCCACTTTGGCCCCAACACCTTCACCGACACCGAGTGGGGCACCGGCCATGCCGATCCCTCGGTCTTCGATCCAACGGCCCTCAATGCCACCCAGTGGGTCACTGTTGCAAAGGAAAATGGATTTTCTCGGGTAATGATACTTGATCAAATTGCCAAACACCATGATGGGTTCTGTTTGTGGCCCTCTGAGTACACCGATTACTCTGTGAAATCTAGTCCTTGGAAGAATGGGAGTGGGGATGTGGTGGGTGAATTGGCTGAGGCTGCTAGAATTGCTGGGATTCAATTGGGGCTTTATCTATCTCCTTGGGATAGGCATGAGGAGACTTATGGGAAGACACTGGAGTATAATGAGTATTATATGGGGCAAATGACTGAGTTGCTAACTAAATATGGTGTGATAAAGGAGGTATGGTTGGATGGCGCAAAAGGGGAGGGAGAGAAGGACATGGAGTACTTCTTTGATGACTGGTTTAGTCTCATTAAGCAGCTGCAGCCTGGTGCTGTTATTTTCTCTGATGACGGTCCAGATACCAGATGGGTTGGAGACGAGGGCGGTTTTGCGGGGACCACTTGCTGGTCCCTTTTCAACAGAAGTGATGCAAAGATTGGCGACACTGATGCCAGCTATTCACAAGGAGGAGATCCACTTGGTCATGATTGGGTACCCGCCGAGTGCGACGTCTCCATCAGACCAGGCTGGTTTTGGCACGCATCCGAAGTCCCAAAATCCCCAATGGAGCTTCTTGACTTGTACTACAAATCTGCCGGTCGAAACTGCCTCTTGCTACTAAACATCCCACCAAACTCATCAGGTCTCATATCCGAACAAGATGTACAAGTCCTTAGAGAATTCAACAAACTCCGAACCTCGATATTCACCCTTAATTATGCGCAAAATGCCCTTGTCTCCGCCAGCAGCACCCGAGGTGGGCTCGGCGATCCCCGGTTTTCCTCCCAACGTGTCCTTGAAGAAGGCATTTACACCTACTGGGCTCCCAATAAGAACCAGACGCATTGGACATTGTACTTTGACTTTAATGAAAAGGTGACTTTCAATCTTTTGCTAGTTCAAGAGCCGATTCAAATGGGGCAGAGGATTATTGCGTTTCATTTGGATATCTTGAAGAGTAACGGGAATTGGGAACAAGTGACGAATGGCACGACCGTTGGGTACCGTAGGCTGTTGCTTTTTCCAAAGGTGGATTCTTCTCAATTGAGGTTTGTTATCGACAAATCTCGAGCGGACCCTTTAATTTCTTATTTGGGAATTTATTTCGATCCATTTTCCATTTTGAGCGAAAGAATTGGTTCCAATACAATCTCTACATTACACTTAAATGGTAGTGACATTCTTGAGCAAGTTGCACACAATCTTTCTCGTATTGCATCATTTTAG

Network for GWHGAAZE009072

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01120.18	Alpha_L_fucos	92	357	6.40E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01206	FUCA	Other glycan degradation	map00511
K01206	FUCA	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004560	molecular_function	alpha-L-fucosidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.410
	SRR3591706	second leaf	8.395
	SRR3591707	mature leaf	6.175
	SRR3591708	Shoot apex	9.672
	SRR3591709	Stem	8.365
	SRR3591710	White floral bud	1.912
	SRR3591711	White flower	2.341
	SRR3591712	Green floral bud	2.877
	SRR3591713	Yellow flower	1.582
SRP173429	SRR8316895	Juvenile bud stage	7.095
	SRR8316896	Juvenile bud stage	5.375
	SRR8316897	Juvenile bud stage	2.282
	SRR8316894	Third green stage	1.937
	SRR8316900	Third green stage	4.675
	SRR8316901	Third green stage	3.814
	SRR8316898	Complete white stage	0.428
	SRR8316899	Complete white stage	4.160
	SRR8316903	Complete white stage	1.556
	SRR8316902	Silver flowering stage	1.463
	SRR8316904	Silver flowering stage	1.724
	SRR8316905	Silver flowering stage	0.737
	SRR8316906	Gold flowering stage	4.057
	SRR8316907	Gold flowering stage	4.167
	SRR8316908	Gold flowering stage	5.024
SRP132670	SRR6706286	Control	4.090
	SRR6706287	Light intensity 50%	4.041
	SRR6706288	Light intensity 20%	4.628
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.821
	CNS0095593	Slightly white alabastrum(diploid) 2	2.541
	CNS0095594	Slightly white alabastrum(diploid) 3	3.441
	CNS0095595	Whole white alabastrum(diploid) 2	4.544
	CNS0095596	Whole white alabastrum(diploid) 3	3.057
	CNS0095597	Whole white alabastrum(diploid) 4	2.514
	CNS0095598	Silvery flower (diploied) 1	6.824
	CNS0095599	Silvery flower (diploied) 2	6.085
	CNS0095600	Silvery flower (diploied) 3	5.786
	CNS0095601	Golden flower (diploid) 1	4.450
	CNS0095602	Golden flower (diploid) 2	8.981
	CNS0095603	Golden flower (diploid) 3	8.497
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.800
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.238
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.458
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.905
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.432
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.488
	CNS0095610	Silvery flower (tetraploid) 1	6.241
	CNS0095611	Silvery flower (tetraploid) 2	6.274
	CNS0095612	Silvery flower (tetraploid) 3	3.252
	CNS0095613	Golden flower (tetraploid) 1	2.406
	CNS0095614	Golden flower (tetraploid) 2	5.163
	CNS0095615	Golden flower (tetraploid) 3	1.952
CRA001975	CRR073297	Stem 1	9.384
	CRR073298	Stem 2	7.509
	CRR073299	Stem 3	7.762
	CRR073300	Leaf 1	3.898
	CRR073301	Leaf 2	3.241
	CRR073302	Leaf 3	1.646
	CRR073303	Juvenile bud 1	2.070
	CRR073304	Juvenile bud 2	1.286
	CRR073305	Juvenile bud 3	2.072
	CRR073306	Third green 1	1.176
	CRR073307	Third green 2	0.529
	CRR073308	Third green 3	1.138
	CRR073309	Second white 1	2.742
	CRR073310	Second white 2	1.915
	CRR073311	Second white 3	2.168
	CRR073312	Silver flowering 1	3.433
	CRR073313	Silver flowering 2	2.278
	CRR073314	Silver flowering 3	3.952
	CRR073315	Gold flowering 1	8.433
	CRR073316	Gold flowering 2	12.225
	CRR073317	Gold flowering 3	8.910
	CRR073318	Tawny withering 1	10.204
	CRR073319	Tawny withering 2	7.315
	CRR073320	Tawny withering 3	9.603