Gene detail

Detail information of GWHGAAZE009097

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009611941.1	PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9SL29\|CNG15_ARATH	Putative cyclic nucleotide-gated ion channel 15
trEMBL	tr\|M1AE97\|M1AE97_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400020893}
TAIR10	AT2G28260.1	cyclic nucleotide-gated channel 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	102292523	102295586	+
GWHAAZE00000002	mRNA	102292523	102295586	+
GWHAAZE00000002	exon	102292523	102292735	+
GWHAAZE00000002	exon	102293561	102293853	+
GWHAAZE00000002	exon	102294226	102294337	+
GWHAAZE00000002	exon	102294431	102294667	+
GWHAAZE00000002	exon	102295074	102295586	+
GWHAAZE00000002	CDS	102292523	102292735	+
GWHAAZE00000002	CDS	102293561	102293853	+
GWHAAZE00000002	CDS	102294226	102294337	+
GWHAAZE00000002	CDS	102294431	102294667	+
GWHAAZE00000002	CDS	102295074	102295586	+

Transcript Sequence
>GWHTAAZE009107 GTATTGATTTGGATTATTATACCAAGTCTAAGTGGATCGACTATGGCCAACACGAAAAATGTGCTTCGGTTCATCATCATTTTTCAATATATACCGAGACTTGTGCTTATATTTCCACTTTCATCGCAAATAATAAAGACGACCGGTGTTGTGACAGAAACAGCGTGGGCCGGAGCTGCTTATAATTTGATGCTATACATGTTGGCAAGCCATGTTGCAGGAGCCTGTTGGTATCTTTTATCGATTGAGAGACAAGAAGCATGCTGGAGAAGTGTATGCAGCATGGAGAGCCAATCCTGTCAGCATGAATTCTTCGATTGCCATAGAATTAAAGACTCTCCTAGAGTCTCATGGTTCCAGTCAAGCAATATAACGAGCCAATGTGATCCGAACCTTAGCTCTTACCCATTTGGTATTTATGCTGATGCATTGACTACAAGTGTTACTTCGGCAGCATTCTTCAATAAGTACTTTTACTGTCTTTGGTGGGGCTTGAAGAACTTAAGTTCTCTTGGCCAAAATTTCAGTACAACTACTTATGTTGGGGAAATAAGTTTCGCCATTGTAATCGCAACCTTGGGATTAGTTCTCTTCGCGTTGCTCATTGGTAATATGCAAACGTATCTCCAATCCACTACTGTTCGATTAGAAGAATGGAGGATCAAGAGAACAGATACAGAACAATGGATGCACCATAGGCAACTACCACAAGAATTAAGGATGTCTGTACGGAAATATGATCAATATAAGTGGGCTGCTACTCGAGGGGTCGATGAAGAAACTCTTCTCAAAGGCCTTCCTTTGGATCTTCGAAGAGACATTAAGCGCCACCTTTGTTATGATCTTGTTCGACGAGTCCCATTGTTCGATCAAATGCATGACCGAATGCTAGACGCTATATGTGAGAGGCTCAAACCGGCCTTGTGCACCCAAGGCACGTGCCTAGTGCGTGAGGGTGACCCTGTTAACGAAATGCTTTTCATAATCCGGGGCAATCTTGACTCCTACACCACCAATGGTGGCCGGACCGGCTTCTTCAATTCGTGTCGGATTGGGCCCGGCGACTTTTGCGGCGAGGAGCTCCTAACATGGGCCCTTGACCCACGCCCGAGCGTCGTGATCCCCTCTTCGACTCGAACAGTAAAAGCCATTTCGGAAGTTGAGGCATTCGCGCTCATAGCCGAGGACTTGAAGTTCGTGGCCTCGCAGTTCCGGAGGCTCCACAGCAAGCAGCTCCGGCACAAGTTTCGCTTCTACTCGCACCAGTGGCGGACATGGGCCGCGTGCTCCGTGCAGGCTGCGTGGCGGCGGTACAAGAAGAGGAAGAGCTCTGCGGCACTCAAGGCAAGAGAGAAACACGCGTTTTGA

Network for GWHGAAZE009097

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00520.32	Ion_trans	4	215	4.50E-17
PF00027.30	cNMP_binding	311	397	1.10E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05391	CNGC	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006811	biological_process	ion transport
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0005216	molecular_function	ion channel activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.290
	SRR3591706	second leaf	13.586
	SRR3591707	mature leaf	10.323
	SRR3591708	Shoot apex	6.174
	SRR3591709	Stem	11.930
	SRR3591710	White floral bud	4.700
	SRR3591711	White flower	5.328
	SRR3591712	Green floral bud	7.030
	SRR3591713	Yellow flower	1.423
SRP173429	SRR8316895	Juvenile bud stage	6.761
	SRR8316896	Juvenile bud stage	8.411
	SRR8316897	Juvenile bud stage	3.511
	SRR8316894	Third green stage	3.273
	SRR8316900	Third green stage	10.960
	SRR8316901	Third green stage	10.933
	SRR8316898	Complete white stage	2.683
	SRR8316899	Complete white stage	14.717
	SRR8316903	Complete white stage	3.504
	SRR8316902	Silver flowering stage	3.221
	SRR8316904	Silver flowering stage	4.230
	SRR8316905	Silver flowering stage	2.679
	SRR8316906	Gold flowering stage	10.445
	SRR8316907	Gold flowering stage	7.033
	SRR8316908	Gold flowering stage	12.573
SRP132670	SRR6706286	Control	6.969
	SRR6706287	Light intensity 50%	8.496
	SRR6706288	Light intensity 20%	9.717
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.865
	CNS0095593	Slightly white alabastrum(diploid) 2	8.823
	CNS0095594	Slightly white alabastrum(diploid) 3	5.762
	CNS0095595	Whole white alabastrum(diploid) 2	4.620
	CNS0095596	Whole white alabastrum(diploid) 3	4.248
	CNS0095597	Whole white alabastrum(diploid) 4	5.694
	CNS0095598	Silvery flower (diploied) 1	17.486
	CNS0095599	Silvery flower (diploied) 2	8.499
	CNS0095600	Silvery flower (diploied) 3	4.404
	CNS0095601	Golden flower (diploid) 1	14.225
	CNS0095602	Golden flower (diploid) 2	7.231
	CNS0095603	Golden flower (diploid) 3	8.202
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.697
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.355
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.815
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.448
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.167
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.851
	CNS0095610	Silvery flower (tetraploid) 1	2.176
	CNS0095611	Silvery flower (tetraploid) 2	2.564
	CNS0095612	Silvery flower (tetraploid) 3	2.051
	CNS0095613	Golden flower (tetraploid) 1	0.860
	CNS0095614	Golden flower (tetraploid) 2	2.160
	CNS0095615	Golden flower (tetraploid) 3	1.157
CRA001975	CRR073297	Stem 1	11.355
	CRR073298	Stem 2	9.792
	CRR073299	Stem 3	6.898
	CRR073300	Leaf 1	15.336
	CRR073301	Leaf 2	16.925
	CRR073302	Leaf 3	12.917
	CRR073303	Juvenile bud 1	12.168
	CRR073304	Juvenile bud 2	12.540
	CRR073305	Juvenile bud 3	12.474
	CRR073306	Third green 1	2.374
	CRR073307	Third green 2	2.128
	CRR073308	Third green 3	3.051
	CRR073309	Second white 1	1.635
	CRR073310	Second white 2	3.484
	CRR073311	Second white 3	3.544
	CRR073312	Silver flowering 1	3.728
	CRR073313	Silver flowering 2	2.208
	CRR073314	Silver flowering 3	2.087
	CRR073315	Gold flowering 1	12.095
	CRR073316	Gold flowering 2	12.126
	CRR073317	Gold flowering 3	9.552
	CRR073318	Tawny withering 1	28.511
	CRR073319	Tawny withering 2	26.606
	CRR073320	Tawny withering 3	25.051