Gene detail

Detail information of GWHGAAZE009100

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009617481.1	0	PREDICTED: uncharacterized protein LOC104109818 [Nicotiana tomentosiformis]
trEMBL	tr\|M1AE93\|M1AE93_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400020886}
TAIR10	AT2G28310.3	4E-164	Protein of unknown function (DUF707)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	102424520	102432519	+
GWHAAZE00000002	mRNA	102424520	102432519	+
GWHAAZE00000002	exon	102424520	102424539	+
GWHAAZE00000002	exon	102424927	102425038	+
GWHAAZE00000002	exon	102425119	102425215	+
GWHAAZE00000002	exon	102426259	102426266	+
GWHAAZE00000002	exon	102426331	102426435	+
GWHAAZE00000002	exon	102426830	102426913	+
GWHAAZE00000002	exon	102427035	102427150	+
GWHAAZE00000002	exon	102427560	102427661	+
GWHAAZE00000002	exon	102427758	102427871	+
GWHAAZE00000002	exon	102427975	102428031	+
GWHAAZE00000002	exon	102430691	102430757	+
GWHAAZE00000002	exon	102431052	102431105	+
GWHAAZE00000002	exon	102431909	102431983	+
GWHAAZE00000002	exon	102432418	102432519	+
GWHAAZE00000002	CDS	102424520	102424539	+
GWHAAZE00000002	CDS	102424927	102425038	+
GWHAAZE00000002	CDS	102425119	102425215	+
GWHAAZE00000002	CDS	102426259	102426266	+
GWHAAZE00000002	CDS	102426331	102426435	+
GWHAAZE00000002	CDS	102426830	102426913	+
GWHAAZE00000002	CDS	102427035	102427150	+
GWHAAZE00000002	CDS	102427560	102427661	+
GWHAAZE00000002	CDS	102427758	102427871	+
GWHAAZE00000002	CDS	102427975	102428031	+
GWHAAZE00000002	CDS	102430691	102430757	+
GWHAAZE00000002	CDS	102431052	102431105	+
GWHAAZE00000002	CDS	102431909	102431983	+
GWHAAZE00000002	CDS	102432418	102432519	+

Transcript Sequence
>GWHTAAZE009110 ATGGGAAGCGTACACCGCAGTGGCGTTTTAAAGAAATCAAATGATAGTGCAAGACTTATTCTAACGGCTATTATAGGAATGGTATTTGGATATTTTGTTGGCATTTCATTTCCGACTGTTTCTCTTACCAAGATCAACTTACCTTCAAGCCTTATGTCATCTTTTGATGTAGCCTACAACAATGATCGCAATAAACCCATGCGCAGTTTCCCAGAAAATCTTGGTTCGGACTTGCAAATATTCGTTCCAACAAATCCTCGTGGTGCAGAGTCGTTACCTCCAGGAATTGTAGTTTCGGAGTCTGACTTTTATTTGCGAAGATTATGGGGTGAACCAAGTGAGGACTTGAAAAAGAAGCCAAAGTACTTGGTAACATTTACAGTTGGTTTTGATCAGAGGCATAATATTGATGCTGCAGTTAAAAAGTTCTCTGATGATTTCCAGATTTTGCTTTTCCACTATGATGGCCGGACTAATGAGTGGGATCAGTATGAGTGGGCAAAGCGGGCAGTTCATGTCAGCATAAGGAAACAAACAAAATGGTGGTATGCGAAAAGGTTTTTGCATCCTGACGTGGTAGCAGCTTATGATTACATTTTCATTTGGGATGAAGACCTTGGAGTTGAACACTTCAACGGGGACAAGTATATTCAATTAGTCAAGAAACACGGGTTGGACATTTCTCAACCAGGTCTTGAGCCAAATAATGGCCTAACATGGCAGATGACTAAGCGTAGAGGTGACAAGGAAGTTCACAAGGATACAGAAGAAAAACCAGGCTGGTGCAGTGATCCACATTTGCCTCCATGCGCTGCGTTTGTAGAGATTATGGCCCCAGTGTTTTCTCGGGAAGCTTGGCGCTGTGTGTGGCATATGATTCAGAATGATCTGGTCCATGGATGGGGTCTGGATTTTGCCCTCAGAAGATGTGTAGAGCCTGCACATGAAAAGATTGGTGTTGTTGATTCACAATGGATTATTCATCAAGTAATTCCTTCTCTTGGGAGTCAGCAAGCTATAAAAGCTAGTGAAGTCATGCAAGAAGAATCTAAGTGGGAGGTGGTGTCCTTGTCAAAGACTCAAGGAGGACCTAAAGCCAGAAATAAAAGCTAG

Network for GWHGAAZE009100

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0197

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05212.13	DUF707	84	355	1.80E-133

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.010
	SRR3591706	second leaf	25.534
	SRR3591707	mature leaf	18.145
	SRR3591708	Shoot apex	33.543
	SRR3591709	Stem	64.619
	SRR3591710	White floral bud	63.809
	SRR3591711	White flower	52.655
	SRR3591712	Green floral bud	35.419
	SRR3591713	Yellow flower	46.130
SRP173429	SRR8316895	Juvenile bud stage	15.553
	SRR8316896	Juvenile bud stage	20.588
	SRR8316897	Juvenile bud stage	9.141
	SRR8316894	Third green stage	9.662
	SRR8316900	Third green stage	25.119
	SRR8316901	Third green stage	23.276
	SRR8316898	Complete white stage	22.453
	SRR8316899	Complete white stage	45.053
	SRR8316903	Complete white stage	37.702
	SRR8316902	Silver flowering stage	17.348
	SRR8316904	Silver flowering stage	27.774
	SRR8316905	Silver flowering stage	12.799
	SRR8316906	Gold flowering stage	45.488
	SRR8316907	Gold flowering stage	42.822
	SRR8316908	Gold flowering stage	45.903
SRP132670	SRR6706286	Control	25.384
	SRR6706287	Light intensity 50%	24.717
	SRR6706288	Light intensity 20%	24.943
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.189
	CNS0095593	Slightly white alabastrum(diploid) 2	19.210
	CNS0095594	Slightly white alabastrum(diploid) 3	13.978
	CNS0095595	Whole white alabastrum(diploid) 2	16.663
	CNS0095596	Whole white alabastrum(diploid) 3	13.116
	CNS0095597	Whole white alabastrum(diploid) 4	16.833
	CNS0095598	Silvery flower (diploied) 1	26.129
	CNS0095599	Silvery flower (diploied) 2	22.355
	CNS0095600	Silvery flower (diploied) 3	38.731
	CNS0095601	Golden flower (diploid) 1	21.119
	CNS0095602	Golden flower (diploid) 2	37.535
	CNS0095603	Golden flower (diploid) 3	36.598
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.923
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.410
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.867
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.831
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.713
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.389
	CNS0095610	Silvery flower (tetraploid) 1	38.198
	CNS0095611	Silvery flower (tetraploid) 2	32.518
	CNS0095612	Silvery flower (tetraploid) 3	38.948
	CNS0095613	Golden flower (tetraploid) 1	23.759
	CNS0095614	Golden flower (tetraploid) 2	31.146
	CNS0095615	Golden flower (tetraploid) 3	33.724
CRA001975	CRR073297	Stem 1	18.461
	CRR073298	Stem 2	16.948
	CRR073299	Stem 3	18.001
	CRR073300	Leaf 1	18.154
	CRR073301	Leaf 2	16.545
	CRR073302	Leaf 3	20.134
	CRR073303	Juvenile bud 1	20.886
	CRR073304	Juvenile bud 2	21.164
	CRR073305	Juvenile bud 3	22.103
	CRR073306	Third green 1	18.021
	CRR073307	Third green 2	20.084
	CRR073308	Third green 3	19.442
	CRR073309	Second white 1	26.999
	CRR073310	Second white 2	23.270
	CRR073311	Second white 3	20.099
	CRR073312	Silver flowering 1	22.192
	CRR073313	Silver flowering 2	22.828
	CRR073314	Silver flowering 3	23.052
	CRR073315	Gold flowering 1	12.988
	CRR073316	Gold flowering 2	18.998
	CRR073317	Gold flowering 3	12.450
	CRR073318	Tawny withering 1	29.128
	CRR073319	Tawny withering 2	33.984
	CRR073320	Tawny withering 3	38.949