Detail information of GWHGAAZE009109


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010651163.10PREDICTED: homeobox-leucine zipper protein REVOLUTA [Vitis vinifera]
Swissprottr|Q9SE43|REV_ARATH0Homeobox-leucine zipper protein REVOLUTA
trEMBLtr|D7SKZ0|D7SKZ0_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI16318.3}
TAIR10AT5G60690.10Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene102694837102703245-
GWHAAZE00000002mRNA102694837102703245-
GWHAAZE00000002exon102694837102694986-
GWHAAZE00000002exon102695564102695713-
GWHAAZE00000002exon102696473102696814-
GWHAAZE00000002exon102697325102697459-
GWHAAZE00000002exon102697562102697642-
GWHAAZE00000002exon102698146102698334-
GWHAAZE00000002exon102698715102698898-
GWHAAZE00000002exon102698999102699105-
GWHAAZE00000002exon102700106102700180-
GWHAAZE00000002exon102700265102700420-
GWHAAZE00000002exon102701012102701095-
GWHAAZE00000002exon102701187102701300-
GWHAAZE00000002exon102701436102701531-
GWHAAZE00000002exon102701652102701742-
GWHAAZE00000002exon102701813102701898-
GWHAAZE00000002exon102702270102702429-
GWHAAZE00000002exon102703010102703245-
GWHAAZE00000002CDS102703010102703245-
GWHAAZE00000002CDS102702270102702429-
GWHAAZE00000002CDS102701813102701898-
GWHAAZE00000002CDS102701652102701742-
GWHAAZE00000002CDS102701436102701531-
GWHAAZE00000002CDS102701187102701300-
GWHAAZE00000002CDS102701012102701095-
GWHAAZE00000002CDS102700265102700420-
GWHAAZE00000002CDS102700106102700180-
GWHAAZE00000002CDS102698999102699105-
GWHAAZE00000002CDS102698715102698898-
GWHAAZE00000002CDS102698146102698334-
GWHAAZE00000002CDS102697562102697642-
GWHAAZE00000002CDS102697325102697459-
GWHAAZE00000002CDS102696473102696814-
GWHAAZE00000002CDS102695564102695713-
GWHAAZE00000002CDS102694837102694986-
Transcript Sequence

Network for GWHGAAZE009109

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00046.30Homeodomain26843.80E-16
PF01852.20START1653726.30E-47
PF08670.12MEKHLA7128101.90E-32
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyHB-HD-ZIP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding
GO:0008289molecular_functionlipid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf38.470
SRR3591706second leaf10.282
SRR3591707mature leaf5.179
SRR3591708Shoot apex25.035
SRR3591709Stem53.575
SRR3591710White floral bud8.074
SRR3591711White flower9.545
SRR3591712Green floral bud7.146
SRR3591713Yellow flower5.862
SRP173429 SRR8316895Juvenile bud stage 4.173
SRR8316896Juvenile bud stage 5.614
SRR8316897Juvenile bud stage 1.611
SRR8316894Third green stage 2.039
SRR8316900Third green stage 2.562
SRR8316901Third green stage 3.221
SRR8316898Complete white stage 0.995
SRR8316899Complete white stage 5.594
SRR8316903Complete white stage 3.635
SRR8316902Silver flowering stage1.317
SRR8316904Silver flowering stage1.133
SRR8316905Silver flowering stage0.393
SRR8316906Gold flowering stage 1.609
SRR8316907Gold flowering stage 1.562
SRR8316908Gold flowering stage 1.745
SRP132670SRR6706286Control2.119
SRR6706287Light intensity 50%1.790
SRR6706288Light intensity 20%1.920
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.568
CNS0095593Slightly white alabastrum(diploid) 23.171
CNS0095594Slightly white alabastrum(diploid) 32.567
CNS0095595Whole white alabastrum(diploid) 21.723
CNS0095596Whole white alabastrum(diploid) 31.280
CNS0095597Whole white alabastrum(diploid) 41.024
CNS0095598Silvery flower (diploied) 18.270
CNS0095599Silvery flower (diploied) 24.874
CNS0095600Silvery flower (diploied) 33.737
CNS0095601Golden flower (diploid) 16.030
CNS0095602Golden flower (diploid) 27.212
CNS0095603Golden flower (diploid) 37.026
CNS0095604Slightly white alabastrum(tetraploid) 13.576
CNS0095605Slightly white alabastrum(tetraploid) 22.534
CNS0095606Slightly white alabastrum(tetraploid) 38.773
CNS0095607Whole white alabastrum(tetraploid) 12.274
CNS0095608Whole white alabastrum(tetraploid) 20.867
CNS0095609Whole white alabastrum(tetraploid) 31.311
CNS0095610Silvery flower (tetraploid) 14.623
CNS0095611Silvery flower (tetraploid) 24.661
CNS0095612Silvery flower (tetraploid) 34.204
CNS0095613Golden flower (tetraploid) 11.054
CNS0095614Golden flower (tetraploid) 23.168
CNS0095615Golden flower (tetraploid) 31.577
CRA001975CRR073297Stem 16.742
CRR073298Stem 25.633
CRR073299Stem 37.596
CRR073300Leaf 13.240
CRR073301Leaf 24.331
CRR073302Leaf 33.459
CRR073303Juvenile bud 12.303
CRR073304Juvenile bud 20.819
CRR073305Juvenile bud 34.434
CRR073306Third green 11.282
CRR073307Third green 23.082
CRR073308Third green 32.809
CRR073309Second white 10.851
CRR073310Second white 21.841
CRR073311Second white 31.598
CRR073312Silver flowering 11.473
CRR073313Silver flowering 20.536
CRR073314Silver flowering 31.537
CRR073315Gold flowering 11.267
CRR073316Gold flowering 26.189
CRR073317Gold flowering 32.874
CRR073318Tawny withering 163.943
CRR073319Tawny withering 232.605
CRR073320Tawny withering 375.678