Detail information of GWHGAAZE009110


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002285170.10PREDICTED: protein SAND [Vitis vinifera]
trEMBLtr|D7SKY8|D7SKY8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI16316.3}
TAIR10AT2G28390.15E-159SAND family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene102721054102734251-
GWHAAZE00000002mRNA102721054102734251-
GWHAAZE00000002exon102721054102721166-
GWHAAZE00000002exon102722078102722142-
GWHAAZE00000002exon102722784102722875-
GWHAAZE00000002exon102724022102724324-
GWHAAZE00000002exon102725041102725130-
GWHAAZE00000002exon102726808102726910-
GWHAAZE00000002exon102727020102727117-
GWHAAZE00000002exon102730907102731013-
GWHAAZE00000002exon102731516102731555-
GWHAAZE00000002exon102731684102731755-
GWHAAZE00000002exon102731906102731985-
GWHAAZE00000002exon102733763102734251-
GWHAAZE00000002CDS102733763102734251-
GWHAAZE00000002CDS102731906102731985-
GWHAAZE00000002CDS102731684102731755-
GWHAAZE00000002CDS102731516102731555-
GWHAAZE00000002CDS102730907102731013-
GWHAAZE00000002CDS102727020102727117-
GWHAAZE00000002CDS102726808102726910-
GWHAAZE00000002CDS102725041102725130-
GWHAAZE00000002CDS102724022102724324-
GWHAAZE00000002CDS102722784102722875-
GWHAAZE00000002CDS102722078102722142-
GWHAAZE00000002CDS102721071102721166-
GWHAAZE00000002three_prime_UTR102721054102721070-
Transcript Sequence

Network for GWHGAAZE009110

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF19036.1Fuz_longin_11752265.00E-08
PF19038.1Fuz_longin_34305302.40E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K20195MON1 Autophagy - yeast map04138

Gene Ontology

GO term OntologyName
GO:0006623biological_processprotein targeting to vacuole

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.083
SRR3591706second leaf17.576
SRR3591707mature leaf18.133
SRR3591708Shoot apex19.585
SRR3591709Stem27.457
SRR3591710White floral bud18.526
SRR3591711White flower21.954
SRR3591712Green floral bud19.496
SRR3591713Yellow flower20.928
SRP173429 SRR8316895Juvenile bud stage 13.194
SRR8316896Juvenile bud stage 19.970
SRR8316897Juvenile bud stage 8.542
SRR8316894Third green stage 7.085
SRR8316900Third green stage 18.174
SRR8316901Third green stage 17.239
SRR8316898Complete white stage 5.989
SRR8316899Complete white stage 24.047
SRR8316903Complete white stage 12.978
SRR8316902Silver flowering stage7.372
SRR8316904Silver flowering stage12.630
SRR8316905Silver flowering stage5.328
SRR8316906Gold flowering stage 17.696
SRR8316907Gold flowering stage 16.463
SRR8316908Gold flowering stage 16.537
SRP132670SRR6706286Control17.147
SRR6706287Light intensity 50%16.618
SRR6706288Light intensity 20%18.189
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.511
CNS0095593Slightly white alabastrum(diploid) 210.679
CNS0095594Slightly white alabastrum(diploid) 311.271
CNS0095595Whole white alabastrum(diploid) 210.309
CNS0095596Whole white alabastrum(diploid) 39.804
CNS0095597Whole white alabastrum(diploid) 413.506
CNS0095598Silvery flower (diploied) 114.197
CNS0095599Silvery flower (diploied) 212.000
CNS0095600Silvery flower (diploied) 318.088
CNS0095601Golden flower (diploid) 113.007
CNS0095602Golden flower (diploid) 220.775
CNS0095603Golden flower (diploid) 318.277
CNS0095604Slightly white alabastrum(tetraploid) 112.357
CNS0095605Slightly white alabastrum(tetraploid) 211.030
CNS0095606Slightly white alabastrum(tetraploid) 317.180
CNS0095607Whole white alabastrum(tetraploid) 112.554
CNS0095608Whole white alabastrum(tetraploid) 210.872
CNS0095609Whole white alabastrum(tetraploid) 313.091
CNS0095610Silvery flower (tetraploid) 116.219
CNS0095611Silvery flower (tetraploid) 215.305
CNS0095612Silvery flower (tetraploid) 312.608
CNS0095613Golden flower (tetraploid) 19.824
CNS0095614Golden flower (tetraploid) 215.053
CNS0095615Golden flower (tetraploid) 314.624
CRA001975CRR073297Stem 116.014
CRR073298Stem 214.834
CRR073299Stem 313.307
CRR073300Leaf 115.712
CRR073301Leaf 214.188
CRR073302Leaf 310.423
CRR073303Juvenile bud 19.646
CRR073304Juvenile bud 28.446
CRR073305Juvenile bud 313.924
CRR073306Third green 15.790
CRR073307Third green 28.289
CRR073308Third green 37.777
CRR073309Second white 110.459
CRR073310Second white 211.572
CRR073311Second white 311.052
CRR073312Silver flowering 19.241
CRR073313Silver flowering 29.651
CRR073314Silver flowering 39.366
CRR073315Gold flowering 19.556
CRR073316Gold flowering 216.636
CRR073317Gold flowering 38.770
CRR073318Tawny withering 112.432
CRR073319Tawny withering 213.171
CRR073320Tawny withering 312.499