Gene detail

Detail information of GWHGAAZE009113

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006424575.1	1.1173E-110	hypothetical protein CICLE_v10029416mg [Citrus clementina]
Swissprot	tr\|O50003\|RL12_PRUAR	6E-110	60S ribosomal protein L12
trEMBL	tr\|A0A067GD54\|A0A067GD54_CITSI	4E-111	Uncharacterized protein {ECO:0000313\|EMBL:KDO73276.1}
TAIR10	AT5G60670.1	2E-82	Ribosomal protein L11 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	102832072	102833282	+
GWHAAZE00000002	mRNA	102832072	102833282	+
GWHAAZE00000002	exon	102832072	102832278	+
GWHAAZE00000002	exon	102832989	102833282	+
GWHAAZE00000002	CDS	102832072	102832278	+
GWHAAZE00000002	CDS	102832989	102833282	+

Transcript Sequence
>GWHTAAZE009123 ATGCCGCCAAAGTTTGATCCATCACAAGTCGTCGACGTTTACGTCCGAGTCACCGGTGGTGAGGTCGGCGCGGCGAGTTCCCTCGCCCCGAAGATCGGACCCCTCGGTCTCTCTCCGAAGAAGATCGGAGAAGATATCGCAAAGGAGACCGCGAAGGACTGGAAGGGCCTCCGTGTCACCGTCAAGCTCACTGTCCAGAATCGCCAGGCCAAGGTCGCCGTCGTCCCATCTGCAGCTGCTCTGGTCATCAAGGCTTTGAAGGAACCAGAGCGTGACAGGAAAAAGACGAAGAATATTAAGCACACTGGAAACATTTCTCTGGATGATGTGATAGAGATCGCTAAGATAATGAGGCCAAGATCGATGGCAAAGGAGTTGGGCGGAACGGTGAAGGAGATTTTAGGTACTTGTGTGTCTGTTGGATGTACGGTTGATGGTAAGGATCCGAAGGATTTGCAGCAGGAGATTGCTGATGGTGATGTTGAGATTCCTCTTGATTGA

Network for GWHGAAZE009113

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03946.15	Ribosomal_L11_N	10	70	3.40E-20
PF00298.20	Ribosomal_L11	75	144	1.10E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02870	RP-L12e, RPL12	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	55.515
	SRR3591706	second leaf	11.374
	SRR3591707	mature leaf	8.059
	SRR3591708	Shoot apex	59.075
	SRR3591709	Stem	18.144
	SRR3591710	White floral bud	14.149
	SRR3591711	White flower	24.279
	SRR3591712	Green floral bud	58.575
	SRR3591713	Yellow flower	14.647
SRP173429	SRR8316895	Juvenile bud stage	42.849
	SRR8316896	Juvenile bud stage	64.983
	SRR8316897	Juvenile bud stage	32.592
	SRR8316894	Third green stage	23.390
	SRR8316900	Third green stage	87.721
	SRR8316901	Third green stage	77.180
	SRR8316898	Complete white stage	7.783
	SRR8316899	Complete white stage	41.853
	SRR8316903	Complete white stage	8.154
	SRR8316902	Silver flowering stage	6.268
	SRR8316904	Silver flowering stage	4.018
	SRR8316905	Silver flowering stage	2.372
	SRR8316906	Gold flowering stage	9.921
	SRR8316907	Gold flowering stage	12.457
	SRR8316908	Gold flowering stage	17.939
SRP132670	SRR6706286	Control	54.448
	SRR6706287	Light intensity 50%	50.972
	SRR6706288	Light intensity 20%	57.368
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	93.463
	CNS0095593	Slightly white alabastrum(diploid) 2	114.002
	CNS0095594	Slightly white alabastrum(diploid) 3	98.239
	CNS0095595	Whole white alabastrum(diploid) 2	86.147
	CNS0095596	Whole white alabastrum(diploid) 3	103.297
	CNS0095597	Whole white alabastrum(diploid) 4	69.613
	CNS0095598	Silvery flower (diploied) 1	28.407
	CNS0095599	Silvery flower (diploied) 2	21.009
	CNS0095600	Silvery flower (diploied) 3	13.009
	CNS0095601	Golden flower (diploid) 1	19.410
	CNS0095602	Golden flower (diploid) 2	13.182
	CNS0095603	Golden flower (diploid) 3	13.009
	CNS0095604	Slightly white alabastrum(tetraploid) 1	68.764
	CNS0095605	Slightly white alabastrum(tetraploid) 2	80.575
	CNS0095606	Slightly white alabastrum(tetraploid) 3	68.825
	CNS0095607	Whole white alabastrum(tetraploid) 1	41.136
	CNS0095608	Whole white alabastrum(tetraploid) 2	32.144
	CNS0095609	Whole white alabastrum(tetraploid) 3	64.167
	CNS0095610	Silvery flower (tetraploid) 1	14.843
	CNS0095611	Silvery flower (tetraploid) 2	14.615
	CNS0095612	Silvery flower (tetraploid) 3	8.101
	CNS0095613	Golden flower (tetraploid) 1	6.858
	CNS0095614	Golden flower (tetraploid) 2	15.277
	CNS0095615	Golden flower (tetraploid) 3	3.842
CRA001975	CRR073297	Stem 1	99.487
	CRR073298	Stem 2	95.990
	CRR073299	Stem 3	107.781
	CRR073300	Leaf 1	90.260
	CRR073301	Leaf 2	101.555
	CRR073302	Leaf 3	171.441
	CRR073303	Juvenile bud 1	150.163
	CRR073304	Juvenile bud 2	92.758
	CRR073305	Juvenile bud 3	86.146
	CRR073306	Third green 1	7.787
	CRR073307	Third green 2	9.073
	CRR073308	Third green 3	10.473
	CRR073309	Second white 1	14.998
	CRR073310	Second white 2	8.111
	CRR073311	Second white 3	5.949
	CRR073312	Silver flowering 1	9.996
	CRR073313	Silver flowering 2	14.038
	CRR073314	Silver flowering 3	9.923
	CRR073315	Gold flowering 1	44.262
	CRR073316	Gold flowering 2	56.893
	CRR073317	Gold flowering 3	43.513
	CRR073318	Tawny withering 1	95.653
	CRR073319	Tawny withering 2	90.881
	CRR073320	Tawny withering 3	113.199