Detail information of GWHGAAZE009116


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrBAF98296.104-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
Swissprottr|F4K0E8|ISPG_ARATH04-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic (Precursor)
trEMBLtr|A9ZN14|A9ZN14_HEVBR04-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase {ECO:0000313|EMBL:BAF98296.1}
TAIR10AT5G60600.104-hydroxy-3-methylbut-2-enyl diphosphate synthase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene102921075102927550-
GWHAAZE00000002mRNA102921075102927550-
GWHAAZE00000002exon102927343102927550-
GWHAAZE00000002exon102926678102926835-
GWHAAZE00000002exon102926307102926413-
GWHAAZE00000002exon102926088102926210-
GWHAAZE00000002exon102924926102925004-
GWHAAZE00000002exon102924592102924822-
GWHAAZE00000002exon102924188102924304-
GWHAAZE00000002exon102924015102924089-
GWHAAZE00000002exon102923839102923916-
GWHAAZE00000002exon102923669102923728-
GWHAAZE00000002exon102923512102923574-
GWHAAZE00000002exon102922936102923080-
GWHAAZE00000002exon102922700102922838-
GWHAAZE00000002exon102922264102922341-
GWHAAZE00000002exon102922027102922186-
GWHAAZE00000002exon102921832102921930-
GWHAAZE00000002exon102921404102921508-
GWHAAZE00000002exon102921075102921176-
GWHAAZE00000002CDS102927343102927550-
GWHAAZE00000002CDS102926678102926835-
GWHAAZE00000002CDS102926307102926413-
GWHAAZE00000002CDS102926088102926210-
GWHAAZE00000002CDS102924926102925004-
GWHAAZE00000002CDS102924592102924822-
GWHAAZE00000002CDS102924188102924304-
GWHAAZE00000002CDS102924015102924089-
GWHAAZE00000002CDS102923839102923916-
GWHAAZE00000002CDS102923669102923728-
GWHAAZE00000002CDS102923512102923574-
GWHAAZE00000002CDS102922936102923080-
GWHAAZE00000002CDS102922700102922838-
GWHAAZE00000002CDS102922264102922341-
GWHAAZE00000002CDS102922027102922186-
GWHAAZE00000002CDS102921832102921930-
GWHAAZE00000002CDS102921404102921508-
GWHAAZE00000002CDS102921075102921176-
Transcript Sequence

Network for GWHGAAZE009116

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04551.15GcpE876961.20E-142
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03526gcpE, ispG Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName
GO:0008299biological_processisoprenoid biosynthetic process
GO:0055114biological_processoxidation-reduction process
GO:0016114biological_processterpenoid biosynthetic process
GO:0044237biological_processcellular metabolic process
GO:0005506molecular_functioniron ion binding
GO:0046429molecular_function4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf62.459
SRR3591706second leaf107.761
SRR3591707mature leaf344.018
SRR3591708Shoot apex52.622
SRR3591709Stem66.094
SRR3591710White floral bud616.890
SRR3591711White flower531.196
SRR3591712Green floral bud241.121
SRR3591713Yellow flower566.960
SRP173429 SRR8316895Juvenile bud stage 81.585
SRR8316896Juvenile bud stage 134.007
SRR8316897Juvenile bud stage 67.820
SRR8316894Third green stage 77.351
SRR8316900Third green stage 334.883
SRR8316901Third green stage 317.749
SRR8316898Complete white stage 550.528
SRR8316899Complete white stage 639.195
SRR8316903Complete white stage 779.515
SRR8316902Silver flowering stage692.325
SRR8316904Silver flowering stage952.246
SRR8316905Silver flowering stage518.468
SRR8316906Gold flowering stage 1688.087
SRR8316907Gold flowering stage 1405.846
SRR8316908Gold flowering stage 1669.776
SRP132670SRR6706286Control391.037
SRR6706287Light intensity 50%465.443
SRR6706288Light intensity 20%493.141
CNP0000432CNS0095592Slightly white alabastrum(diploid) 173.832
CNS0095593Slightly white alabastrum(diploid) 291.100
CNS0095594Slightly white alabastrum(diploid) 374.052
CNS0095595Whole white alabastrum(diploid) 2105.700
CNS0095596Whole white alabastrum(diploid) 3110.211
CNS0095597Whole white alabastrum(diploid) 4118.543
CNS0095598Silvery flower (diploied) 1173.649
CNS0095599Silvery flower (diploied) 2233.479
CNS0095600Silvery flower (diploied) 31083.412
CNS0095601Golden flower (diploid) 1295.114
CNS0095602Golden flower (diploid) 2801.071
CNS0095603Golden flower (diploid) 3768.419
CNS0095604Slightly white alabastrum(tetraploid) 1115.701
CNS0095605Slightly white alabastrum(tetraploid) 286.700
CNS0095606Slightly white alabastrum(tetraploid) 3230.847
CNS0095607Whole white alabastrum(tetraploid) 167.644
CNS0095608Whole white alabastrum(tetraploid) 291.957
CNS0095609Whole white alabastrum(tetraploid) 3334.404
CNS0095610Silvery flower (tetraploid) 1864.697
CNS0095611Silvery flower (tetraploid) 21144.839
CNS0095612Silvery flower (tetraploid) 31128.388
CNS0095613Golden flower (tetraploid) 1844.060
CNS0095614Golden flower (tetraploid) 2965.498
CNS0095615Golden flower (tetraploid) 31416.513
CRA001975CRR073297Stem 1154.572
CRR073298Stem 2151.151
CRR073299Stem 3145.601
CRR073300Leaf 1316.700
CRR073301Leaf 2259.649
CRR073302Leaf 3279.830
CRR073303Juvenile bud 1420.753
CRR073304Juvenile bud 2540.764
CRR073305Juvenile bud 3528.789
CRR073306Third green 11301.312
CRR073307Third green 2630.985
CRR073308Third green 3869.414
CRR073309Second white 11546.733
CRR073310Second white 21150.657
CRR073311Second white 31546.313
CRR073312Silver flowering 11371.185
CRR073313Silver flowering 21257.388
CRR073314Silver flowering 31179.126
CRR073315Gold flowering 1214.219
CRR073316Gold flowering 2328.093
CRR073317Gold flowering 3242.548
CRR073318Tawny withering 160.670
CRR073319Tawny withering 261.790
CRR073320Tawny withering 336.502