Detail information of GWHGAAZE009119


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP07119.10unnamed protein product [Coffea canephora]
Swissprottr|F4JKK0|SUD1_ARATH0.000003Probable E3 ubiquitin ligase SUD1
trEMBLtr|A0A068UG02|A0A068UG02_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_24 {ECO:0000313|EMBL:CDP07119.1}
TAIR10AT5G60580.32E-126RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene102957513102960939-
GWHAAZE00000002mRNA102957513102960939-
GWHAAZE00000002exon102957513102957737-
GWHAAZE00000002exon102958398102958477-
GWHAAZE00000002exon102958628102958718-
GWHAAZE00000002exon102958798102958882-
GWHAAZE00000002exon102959028102959325-
GWHAAZE00000002exon102959978102960143-
GWHAAZE00000002exon102960589102960939-
GWHAAZE00000002CDS102960589102960939-
GWHAAZE00000002CDS102959978102960143-
GWHAAZE00000002CDS102959028102959325-
GWHAAZE00000002CDS102958798102958882-
GWHAAZE00000002CDS102958628102958718-
GWHAAZE00000002CDS102958398102958477-
GWHAAZE00000002CDS102957513102957737-
Transcript Sequence

Network for GWHGAAZE009119

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12906.8RINGv1892362.60E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.658
SRR3591706second leaf5.096
SRR3591707mature leaf1.215
SRR3591708Shoot apex8.707
SRR3591709Stem10.467
SRR3591710White floral bud9.270
SRR3591711White flower1.481
SRR3591712Green floral bud10.081
SRR3591713Yellow flower1.689
SRP173429 SRR8316895Juvenile bud stage 3.967
SRR8316896Juvenile bud stage 4.667
SRR8316897Juvenile bud stage 1.790
SRR8316894Third green stage 2.909
SRR8316900Third green stage 8.613
SRR8316901Third green stage 7.011
SRR8316898Complete white stage 0.733
SRR8316899Complete white stage 9.870
SRR8316903Complete white stage 1.805
SRR8316902Silver flowering stage0.982
SRR8316904Silver flowering stage1.019
SRR8316905Silver flowering stage0.281
SRR8316906Gold flowering stage 1.288
SRR8316907Gold flowering stage 0.970
SRR8316908Gold flowering stage 0.986
SRP132670SRR6706286Control7.705
SRR6706287Light intensity 50%8.429
SRR6706288Light intensity 20%11.087
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.796
CNS0095593Slightly white alabastrum(diploid) 25.256
CNS0095594Slightly white alabastrum(diploid) 32.375
CNS0095595Whole white alabastrum(diploid) 23.545
CNS0095596Whole white alabastrum(diploid) 33.347
CNS0095597Whole white alabastrum(diploid) 42.691
CNS0095598Silvery flower (diploied) 11.443
CNS0095599Silvery flower (diploied) 21.066
CNS0095600Silvery flower (diploied) 31.286
CNS0095601Golden flower (diploid) 11.328
CNS0095602Golden flower (diploid) 21.253
CNS0095603Golden flower (diploid) 30.807
CNS0095604Slightly white alabastrum(tetraploid) 15.131
CNS0095605Slightly white alabastrum(tetraploid) 23.653
CNS0095606Slightly white alabastrum(tetraploid) 314.416
CNS0095607Whole white alabastrum(tetraploid) 12.632
CNS0095608Whole white alabastrum(tetraploid) 22.118
CNS0095609Whole white alabastrum(tetraploid) 36.559
CNS0095610Silvery flower (tetraploid) 10.714
CNS0095611Silvery flower (tetraploid) 20.904
CNS0095612Silvery flower (tetraploid) 32.702
CNS0095613Golden flower (tetraploid) 10.545
CNS0095614Golden flower (tetraploid) 20.339
CNS0095615Golden flower (tetraploid) 30.895
CRA001975CRR073297Stem 115.066
CRR073298Stem 214.472
CRR073299Stem 311.904
CRR073300Leaf 117.739
CRR073301Leaf 217.834
CRR073302Leaf 312.143
CRR073303Juvenile bud 119.588
CRR073304Juvenile bud 211.560
CRR073305Juvenile bud 317.769
CRR073306Third green 11.341
CRR073307Third green 21.633
CRR073308Third green 31.430
CRR073309Second white 10.550
CRR073310Second white 20.744
CRR073311Second white 31.050
CRR073312Silver flowering 10.386
CRR073313Silver flowering 20.655
CRR073314Silver flowering 31.371
CRR073315Gold flowering 13.122
CRR073316Gold flowering 22.231
CRR073317Gold flowering 32.633
CRR073318Tawny withering 114.724
CRR073319Tawny withering 27.367
CRR073320Tawny withering 318.746