Gene detail

Detail information of GWHGAAZE009126

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007015429.1	7.3402E-175	Nucleic acid binding protein, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|Q9ZWA6\|IDD3_ARATH	2E-109	Zinc finger protein MAGPIE {ECO:0000303\|PubMed:17785527}
trEMBL	tr\|F6GTZ5\|F6GTZ5_VITVI	3E-175	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43659.1}
TAIR10	AT1G03840.1	1E-80	C2H2 and C2HC zinc fingers superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	103063238	103064915	-
GWHAAZE00000002	mRNA	103063238	103064915	-
GWHAAZE00000002	exon	103063238	103064153	-
GWHAAZE00000002	exon	103064310	103064706	-
GWHAAZE00000002	exon	103064828	103064915	-
GWHAAZE00000002	CDS	103064828	103064915	-
GWHAAZE00000002	CDS	103064310	103064706	-
GWHAAZE00000002	CDS	103063238	103064153	-

Transcript Sequence
>GWHTAAZE009136 ATGATGCCAAATAGAATCCCAATTCAAGAACCAAACCCTAATCCAAACCCTAACCCTAATCCATCCAAGAGAAAGCGAAATCTCCCCGATCCAGACGCAGAAGTGATAGCGCTATCGCCAAAATCCCTCATGGCAACAAACCGGTTCCTATGCGAGATATGCAACAAAGGATTTCAAAGAGACCAAAACTTGCAGCTCCATAGAAGAGGCCACAACTTGCCTTGGAAACTAAAGCAAAGAGCAAGCAAAGAGATCAAGAAAAAAGTGTACTTGTGCCCCGTAAAAACTTGCGTTCACCACGATCCAGCAAGGGCCCTCGGAGATCTGACCGGAGTAAAGAAGCATTATAGTAGAAAACATGGGGAGAAGAAGTGGAAGTGTGAGAAATGTTCAAAGAAGTATGCTGTTCAATCTGATTGGAAGGCTCACAGTAAGATTTGTGGCACTAGGGAGTACAAATGTGACTGTGGCACACTTTTTTCTAGAAAGGACAGTTTTATAACGCATAGGGCGTTTTGCGATGCTTTAGCCGAAGAAAGTTGTCGGGTTACTTCGATTCCAGCTGGGATGAATTTGAATTTGAGGAACGAGTTGGTAAATGGGACGCTAGGGGGTTTTCAGCAAGGCGAAAACCCTCAATTTTCAGCTATGTTTCGGCCAGAACTAGCCGGCTCTGGCTTACCAGAGCCGACTAATATGGACGGGCCGAAATCTAGACTACCGTTGTGGTTAGACCACAACAGTACTTCTCATCTAAACCAAATTCCAATGGCCGGTAATGTTAATTCTTTCCTTGGGTCGAGCTCGACAAGCATGGCTGAAGATATGTTCGGATTGTCAGCACAGGCAGAGTGGTTGAAGGAAGACGAAGACAACAAAGGCAATTTGTCGAACTCCTTGAGTTCATTATATTACAACAACAGTAATAATAATCAGAGTCATCATGGCAACATGTCTGCCACTGCTTTGTTGCAAAAAGCGGCCACAATGGGATCTACAACGAGCAACCCGGCATTATTTGGGAGTGGTTTCTCTCCAATTTCTTTATCAAACATGGCAAGCTTTGGCTCTTTGAACCAAAGCAAAAACGAAGTAGTTCAGAATTTTGCAGGGCAGACGAATCACGACCCTAACTATGCATCAAGTACAACAGTAATCTCTAATAACGAGGAGATTTTGTTATCAAGTGAGGCAAACACAAGGCAACCGAACAATTTGATGATGATGGGGAAGCGAAGTAGATCGAGTTTTAACGAAGGTGAAGGAAGTCAGACTAGAGATTTTCTCGGCGTTGGGGCTAGTGAAAGTAGGCCATTTTTGCAACAAGAGTTAGCTAAACTGGCTTCAATGGGTTCGGCCATGGATTTTAGTCAGTACAATGGAGGTCACAGAGTTCTCTGA

Network for GWHGAAZE009126

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.501
	SRR3591706	second leaf	21.448
	SRR3591707	mature leaf	36.320
	SRR3591708	Shoot apex	18.359
	SRR3591709	Stem	17.657
	SRR3591710	White floral bud	11.568
	SRR3591711	White flower	17.649
	SRR3591712	Green floral bud	13.784
	SRR3591713	Yellow flower	11.608
SRP173429	SRR8316895	Juvenile bud stage	24.598
	SRR8316896	Juvenile bud stage	18.020
	SRR8316897	Juvenile bud stage	15.391
	SRR8316894	Third green stage	11.348
	SRR8316900	Third green stage	25.717
	SRR8316901	Third green stage	27.900
	SRR8316898	Complete white stage	6.636
	SRR8316899	Complete white stage	60.594
	SRR8316903	Complete white stage	10.094
	SRR8316902	Silver flowering stage	8.258
	SRR8316904	Silver flowering stage	12.632
	SRR8316905	Silver flowering stage	7.120
	SRR8316906	Gold flowering stage	27.988
	SRR8316907	Gold flowering stage	20.807
	SRR8316908	Gold flowering stage	25.416
SRP132670	SRR6706286	Control	18.046
	SRR6706287	Light intensity 50%	20.628
	SRR6706288	Light intensity 20%	20.924
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.100
	CNS0095593	Slightly white alabastrum(diploid) 2	23.459
	CNS0095594	Slightly white alabastrum(diploid) 3	18.430
	CNS0095595	Whole white alabastrum(diploid) 2	19.775
	CNS0095596	Whole white alabastrum(diploid) 3	8.153
	CNS0095597	Whole white alabastrum(diploid) 4	15.829
	CNS0095598	Silvery flower (diploied) 1	32.283
	CNS0095599	Silvery flower (diploied) 2	21.822
	CNS0095600	Silvery flower (diploied) 3	18.299
	CNS0095601	Golden flower (diploid) 1	15.291
	CNS0095602	Golden flower (diploid) 2	17.962
	CNS0095603	Golden flower (diploid) 3	15.940
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.697
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.437
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.858
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.981
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.258
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.639
	CNS0095610	Silvery flower (tetraploid) 1	11.585
	CNS0095611	Silvery flower (tetraploid) 2	13.093
	CNS0095612	Silvery flower (tetraploid) 3	6.208
	CNS0095613	Golden flower (tetraploid) 1	10.232
	CNS0095614	Golden flower (tetraploid) 2	9.611
	CNS0095615	Golden flower (tetraploid) 3	8.115
CRA001975	CRR073297	Stem 1	23.158
	CRR073298	Stem 2	23.899
	CRR073299	Stem 3	22.077
	CRR073300	Leaf 1	37.223
	CRR073301	Leaf 2	38.488
	CRR073302	Leaf 3	23.962
	CRR073303	Juvenile bud 1	32.949
	CRR073304	Juvenile bud 2	23.636
	CRR073305	Juvenile bud 3	48.732
	CRR073306	Third green 1	7.964
	CRR073307	Third green 2	13.001
	CRR073308	Third green 3	7.971
	CRR073309	Second white 1	6.877
	CRR073310	Second white 2	7.296
	CRR073311	Second white 3	7.189
	CRR073312	Silver flowering 1	5.047
	CRR073313	Silver flowering 2	3.024
	CRR073314	Silver flowering 3	3.993
	CRR073315	Gold flowering 1	18.492
	CRR073316	Gold flowering 2	31.307
	CRR073317	Gold flowering 3	19.373
	CRR073318	Tawny withering 1	20.538
	CRR073319	Tawny withering 2	9.352
	CRR073320	Tawny withering 3	17.899