Gene detail

Detail information of GWHGAAZE009127

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGL39679.1	3.4746E-118	NAC transcription factor 023 [Jatropha curcas]
Swissprot	tr\|Q8GY42\|NAC25_ARATH	2E-68	NAC transcription factor 25
trEMBL	tr\|R4NFT4\|R4NFT4_JATCU	1E-118	NAC transcription factor 023 {ECO:0000313\|EMBL:AGL39679.1}
TAIR10	AT3G15510.1	3E-51	NAC domain containing protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	103087157	103089160	+
GWHAAZE00000002	mRNA	103087157	103089160	+
GWHAAZE00000002	exon	103087157	103087328	+
GWHAAZE00000002	exon	103087608	103087885	+
GWHAAZE00000002	exon	103088576	103089160	+
GWHAAZE00000002	CDS	103087157	103087328	+
GWHAAZE00000002	CDS	103087608	103087885	+
GWHAAZE00000002	CDS	103088576	103089160	+

Transcript Sequence
>GWHTAAZE009137 ATGGAGAGGGAATTCATTTCCAGATTTCATTTCCCTCCTGGTTTCAGGTTCCACCCGTCTGATGAAGAGCTCATCGAACATTACTTGTATAACAAAGTCAACTGCCGTCAACTACCAGCCGACATAATCGCTGAAATTGAGCTTTATAACTACAACCCATGGGACCTGCTCAAGAAGGCGGCCTCGTTTGGAGAAGATGAATGGTACTTCTTTAGCCCGAGGTATCGAAAGTACCCAAACGGAGCAAGGCCAAATAGGATGGCAGCATCGGGTTTTTGGAAGGCTACTGGACCTGACAAGCCAATACTTACTTCCTCTGGATCAAGAAGAATAGGGGTCAAGAAAGCTCTAGTGTTCTACACAGGTCGTCCTCCAAGGGGCCATAAGACAGAATGGGTCATGACTGAGTACCGATTGCCTGACACACTGACCCGCCGAGGGTCCATGAGGTTGGATGATTGGGTACTATGTCGGATTCGACAAAAAGGCAACATGTCAAAGAATACATGGGAAGCTCAAGGCAGCAGTCCCAGCAAGCTGGTGGCCTGCCAGCCAGAGTATGAGGAGCTCCTTTCAGCACAGGCAAATCCTATAGCTAATACGGCCATAATACGAGACACGCTATTCAAAGAGTGCCATATAGTAGCTTCCATACTTGCGGGACACAATCTCCCTCCTATCGAAGCCATTTCTAGTACTACTACCTTTTCAAGTACAGACAACAGCAAAATATGTGGCTCAACTTTAGAGGATGATTCAAGCAGAGGGAATACAAGTGCTAAAAGTTCTTCCTTTGACAATTTCTTAAACTCGTGGAAAGGAAAACCTAATGAGTTACTTTTTTCCACCATGAAAGTGACTGAGGACAACGAAAATGAGGATATTCTGGGTGGAAATGTACTACCCACCATTGCTACAAACTTCTCTAATCAAAATCAGTCTCAAGGGAACATATTCAACCCCAATCTGCTGAACACCATCATGAATTTACAGGAGTGTAATGATTCTGCTTTCTTGGGAAGATTTTTACAGTAA

Network for GWHGAAZE009127

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	12	139	1.10E-35

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.819
	SRR3591709	Stem	0.087
	SRR3591710	White floral bud	2.497
	SRR3591711	White flower	0.225
	SRR3591712	Green floral bud	3.492
	SRR3591713	Yellow flower	0.183
SRP173429	SRR8316895	Juvenile bud stage	0.551
	SRR8316896	Juvenile bud stage	1.070
	SRR8316897	Juvenile bud stage	0.639
	SRR8316894	Third green stage	0.505
	SRR8316900	Third green stage	0.613
	SRR8316901	Third green stage	1.207
	SRR8316898	Complete white stage	0.122
	SRR8316899	Complete white stage	0.549
	SRR8316903	Complete white stage	0.119
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.076
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.220
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.506
	SRR6706287	Light intensity 50%	1.328
	SRR6706288	Light intensity 20%	2.236
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.795
	CNS0095593	Slightly white alabastrum(diploid) 2	0.441
	CNS0095594	Slightly white alabastrum(diploid) 3	3.103
	CNS0095595	Whole white alabastrum(diploid) 2	0.819
	CNS0095596	Whole white alabastrum(diploid) 3	0.763
	CNS0095597	Whole white alabastrum(diploid) 4	2.470
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.038
	CNS0095601	Golden flower (diploid) 1	0.263
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.189
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.410
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.480
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.201
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.885
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.573
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.755
	CNS0095610	Silvery flower (tetraploid) 1	0.113
	CNS0095611	Silvery flower (tetraploid) 2	0.251
	CNS0095612	Silvery flower (tetraploid) 3	0.090
	CNS0095613	Golden flower (tetraploid) 1	0.025
	CNS0095614	Golden flower (tetraploid) 2	0.086
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.505
	CRR073298	Stem 2	0.237
	CRR073299	Stem 3	0.632
	CRR073300	Leaf 1	0.487
	CRR073301	Leaf 2	0.117
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.041
	CRR073304	Juvenile bud 2	0.398
	CRR073305	Juvenile bud 3	0.105
	CRR073306	Third green 1	0.918
	CRR073307	Third green 2	0.073
	CRR073308	Third green 3	0.427
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.054
	CRR073320	Tawny withering 3	0.000