Gene detail

Detail information of GWHGAAZE009132

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002285019.2	PREDICTED: auxin response factor 4 [Vitis vinifera]
Swissprot	tr\|Q9ZTX9\|ARFD_ARATH	Auxin response factor 4
trEMBL	tr\|D7SKV9\|D7SKV9_VITVI	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT5G60450.1	auxin response factor 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	103260113	103267783	+
GWHAAZE00000002	mRNA	103260113	103267783	+
GWHAAZE00000002	exon	103260113	103260481	+
GWHAAZE00000002	exon	103260606	103260662	+
GWHAAZE00000002	exon	103261009	103261194	+
GWHAAZE00000002	exon	103261680	103261764	+
GWHAAZE00000002	exon	103261838	103261928	+
GWHAAZE00000002	exon	103263203	103263367	+
GWHAAZE00000002	exon	103263813	103263932	+
GWHAAZE00000002	exon	103264026	103264101	+
GWHAAZE00000002	exon	103264699	103264861	+
GWHAAZE00000002	exon	103265349	103266091	+
GWHAAZE00000002	exon	103266625	103266815	+
GWHAAZE00000002	exon	103267621	103267783	+
GWHAAZE00000002	CDS	103260113	103260481	+
GWHAAZE00000002	CDS	103260606	103260662	+
GWHAAZE00000002	CDS	103261009	103261194	+
GWHAAZE00000002	CDS	103261680	103261764	+
GWHAAZE00000002	CDS	103261838	103261928	+
GWHAAZE00000002	CDS	103263203	103263367	+
GWHAAZE00000002	CDS	103263813	103263932	+
GWHAAZE00000002	CDS	103264026	103264101	+
GWHAAZE00000002	CDS	103264699	103264861	+
GWHAAZE00000002	CDS	103265349	103266091	+
GWHAAZE00000002	CDS	103266625	103266815	+
GWHAAZE00000002	CDS	103267621	103267783	+

Transcript Sequence
>GWHTAAZE009142 ATGGAAATTGATCTGAACCATGAAGTGATTGATGTGGAGAAAAATGGGTACTGTTGTAATGGGGAGTGTAACAAGGGTGATGATGGGTGTGTTTTCTGCTGTTTGTCTTCTTCAAATTCCTCATCATGCTCTTCAAATTCCTCCTCACCACCAACTACTGCTAATTCTTCCTCAATTTACATGGAACTTTGGCATGCTTGTGCTGGGCCCCTCACTAACCTCCCCAAGAAAGGGAATGTGGTTGTCTACTTCCCACAAGGCCACTTTGAACAATCTCTCTCTTCCCCTACTCACTTTCCACCCCTTGAATTCCCCAATTTTGATCTCAAACCCCAAATCTTCTCTAGGGTTTTGGATGTTCAGCTGCTTGCTAATAAGGAGAATGATGAGGTCTTTACACAGCTGACTTTACTCCCCCTACCAGAGTTGCTAGGTACAAGCTTGGAGAGCAAAGATCATGAAGGGTTGGGGATGGGAGAGGAAGGGGGTGGAGTTACACCCACAAAATCAAACCATCAAATGTTCTGCAAAACACTTACTGCTTCTGATACCAGCACCCACGGTGGATTTTCCGTTCCTCGAAGAGCTGCCGAAGATTGTTTCCCTCCTTTGGATTATAAACAGCAGAGGCCCTCTCAAGAGCTAGTTGCCAAGGATTTGCATGGAGTGGAGTGGAGGTTTCGACACATTTATAGAGGCCAGCCGAGGCGACATTTGCTTACAACGGGATGGAGTATTTTCGTGAGCCAAAAGAATCTTGTTTCTGGGGATGCGGTTCTTTTTTTGAGGGGTGAAAGTGGAGACCTGAGGCTGGGAATTAGAAGAGCTGCTCGACCAAGAAGCGGGCTTCCTTCTTCGATTATTGGCAACCAGAATTCGTATACTAACGTTCTTTCTCAAGTAGCTAGTGCTATATCCACCAAGAGAGTGTTCAATGTTTTCTACAGCCCGAGGGCCAGCCATGCAGATTTTATTGTGCCATATCAAAAATATGTGAAAAGTATCAACAGTCAGATCCCAACTGGGACAAGATTCAAATTGAAGTTTGATATGGATGACTCTCCTGAAAGAAGGTTCAGTGGTGTGGTGACTGGTATAGGTGATTTGGATCCCTATAGATGGCCTAACTCGAAATGGAGATGCTTAATGGTGAGGTGGGATGAGAACATTGTAAGTGACCGTCAAGAACGAGTTTCTCCATGGGAAATCGACATTTCTGTCTCTCTCCCACCCATGAGTATGCAGTCATCCCCGAGGCTGAAAAAACTGCGGACAAGTCTGCAGGAAACTCCACCCGAAAACCCTATTTCTGGAGGGGTTCGGTTTTTGGACTTTGAGGAGTCTATAAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATTTGCGTTCGGTATCACCTCTCTATGGATGTGATAAGACGAACCGCTTGCTGGATTTTGATATGCAATCCATAATAATGCATCAAAATCTCCCCCTAAACCCAGTGGCAAATGTGAATTTCACCGAATTCATGGCAACTCAGCCACCCACCACCACCACTTACACAGGCTTTTTGGAATCAGACACGTTTCCAAAGGTCTTGCAAGGTCAAGAAATTTGCTCACTAAGATCCCTTAAAAAGACCGATTTCAACAACCTCGGACCGTGGGGTAAAACTGATATCGGTTGCAATATTCTCAACATGTATCAAAGACCCAAACCCAGTTTCTATCCACTAGCTTCAGAAGGTGTTAGAAACATGTATTTTCCTTATAATAATGATGTCTTCAAAGGTGCCCAAGATCCTTTAATGCTCCCTTATATGGCTCGTTTCCCAAGAGAAAATGTTCCATTTAATCCATCTTCGGTCCGGAATGGGGCTAGGGATGAAGCTAGAAAACCAAATTTACCGAGTGAAGAGAAAATAGCTTCCCCTCCTATTTTAGAATCAAATGCTGTTAACGAGGAGAACGAAAAGTTAAACAGCGCGGGGAGTGGCTGTAAACTGTTTGGTTTTTCGTTGACCGGAGAAACTTCCGCTTCGAATTCTCAGACGAGTAAGAGGAGCTGTACAAAGGTCCACAAGCAAGGGAACTTGGTGGGAAGAGCCATTGATCTCTCTAAATTGAATGGATATGATGAGCTGCTGATTGAGCTAGAGAGGTTATTTAGCATGGAAGGTCTCTTGAGGGATCCCGATAAAGGATGGCAAATCTTGTTCACCGATGATGAGAATGACATGATGGTTGTCGGGGATGATCCGTGGCTTGAGTTTTGCGATGTGGTGTCCAAGATCCATATATGCACACAAGACGAAGTGGAGAAAATGACAATGGGGATCCCCACTAGTGACGACACTCAGAGTTGCTTGGAAGAAGCGCCGCTCATAATGGACGTGTCCAAGTCTTCGTCGGTTGGCCAGCCGGATTAA

Network for GWHGAAZE009132

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	175	276	3.70E-21
PF06507.14	Auxin_resp	302	382	7.90E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	127.088
	SRR3591706	second leaf	43.315
	SRR3591707	mature leaf	35.391
	SRR3591708	Shoot apex	67.559
	SRR3591709	Stem	129.644
	SRR3591710	White floral bud	19.680
	SRR3591711	White flower	38.113
	SRR3591712	Green floral bud	42.998
	SRR3591713	Yellow flower	21.136
SRP173429	SRR8316895	Juvenile bud stage	33.844
	SRR8316896	Juvenile bud stage	42.614
	SRR8316897	Juvenile bud stage	19.903
	SRR8316894	Third green stage	19.139
	SRR8316900	Third green stage	37.016
	SRR8316901	Third green stage	39.883
	SRR8316898	Complete white stage	9.069
	SRR8316899	Complete white stage	54.994
	SRR8316903	Complete white stage	14.401
	SRR8316902	Silver flowering stage	10.987
	SRR8316904	Silver flowering stage	10.276
	SRR8316905	Silver flowering stage	3.794
	SRR8316906	Gold flowering stage	17.522
	SRR8316907	Gold flowering stage	16.472
	SRR8316908	Gold flowering stage	18.344
SRP132670	SRR6706286	Control	33.368
	SRR6706287	Light intensity 50%	34.957
	SRR6706288	Light intensity 20%	39.882
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.915
	CNS0095593	Slightly white alabastrum(diploid) 2	23.380
	CNS0095594	Slightly white alabastrum(diploid) 3	22.444
	CNS0095595	Whole white alabastrum(diploid) 2	20.233
	CNS0095596	Whole white alabastrum(diploid) 3	14.425
	CNS0095597	Whole white alabastrum(diploid) 4	18.239
	CNS0095598	Silvery flower (diploied) 1	22.958
	CNS0095599	Silvery flower (diploied) 2	19.653
	CNS0095600	Silvery flower (diploied) 3	20.654
	CNS0095601	Golden flower (diploid) 1	13.568
	CNS0095602	Golden flower (diploid) 2	15.920
	CNS0095603	Golden flower (diploid) 3	15.496
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.247
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.155
	CNS0095606	Slightly white alabastrum(tetraploid) 3	66.215
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.759
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.012
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.710
	CNS0095610	Silvery flower (tetraploid) 1	16.336
	CNS0095611	Silvery flower (tetraploid) 2	18.030
	CNS0095612	Silvery flower (tetraploid) 3	20.783
	CNS0095613	Golden flower (tetraploid) 1	9.770
	CNS0095614	Golden flower (tetraploid) 2	11.657
	CNS0095615	Golden flower (tetraploid) 3	6.103
CRA001975	CRR073297	Stem 1	58.253
	CRR073298	Stem 2	53.177
	CRR073299	Stem 3	45.464
	CRR073300	Leaf 1	56.591
	CRR073301	Leaf 2	47.565
	CRR073302	Leaf 3	37.639
	CRR073303	Juvenile bud 1	44.434
	CRR073304	Juvenile bud 2	33.679
	CRR073305	Juvenile bud 3	45.473
	CRR073306	Third green 1	6.868
	CRR073307	Third green 2	5.093
	CRR073308	Third green 3	7.806
	CRR073309	Second white 1	9.082
	CRR073310	Second white 2	12.500
	CRR073311	Second white 3	6.827
	CRR073312	Silver flowering 1	5.653
	CRR073313	Silver flowering 2	4.822
	CRR073314	Silver flowering 3	6.186
	CRR073315	Gold flowering 1	12.843
	CRR073316	Gold flowering 2	22.253
	CRR073317	Gold flowering 3	16.792
	CRR073318	Tawny withering 1	37.559
	CRR073319	Tawny withering 2	40.948
	CRR073320	Tawny withering 3	38.585