Detail information of GWHGAAZE009134


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011089334.10PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Sesamum indicum]
Swissprottr|Q680Q4|SIZ1_ARATH0E3 SUMO-protein ligase SIZ1
trEMBLtr|A0A068UG30|A0A068UG30_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_24 {ECO:0000313|EMBL:CDP07144.1}
TAIR10AT5G60410.30DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene103296090103316769-
GWHAAZE00000002mRNA103296090103316769-
GWHAAZE00000002exon103316671103316769-
GWHAAZE00000002exon103312355103312435-
GWHAAZE00000002exon103312181103312223-
GWHAAZE00000002exon103309895103309967-
GWHAAZE00000002exon103309089103309251-
GWHAAZE00000002exon103308250103308383-
GWHAAZE00000002exon103306112103306180-
GWHAAZE00000002exon103305545103305632-
GWHAAZE00000002exon103305374103305449-
GWHAAZE00000002exon103304988103305061-
GWHAAZE00000002exon103304307103304390-
GWHAAZE00000002exon103303213103303374-
GWHAAZE00000002exon103297437103297517-
GWHAAZE00000002exon103296090103297334-
GWHAAZE00000002CDS103316671103316769-
GWHAAZE00000002CDS103312355103312435-
GWHAAZE00000002CDS103312181103312223-
GWHAAZE00000002CDS103309895103309967-
GWHAAZE00000002CDS103309089103309251-
GWHAAZE00000002CDS103308250103308383-
GWHAAZE00000002CDS103306112103306180-
GWHAAZE00000002CDS103305545103305632-
GWHAAZE00000002CDS103305374103305449-
GWHAAZE00000002CDS103304988103305061-
GWHAAZE00000002CDS103304307103304390-
GWHAAZE00000002CDS103303213103303374-
GWHAAZE00000002CDS103297437103297517-
GWHAAZE00000002CDS103296090103297334-
Transcript Sequence

Network for GWHGAAZE009134

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02037.28SAP39671.20E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.233
SRR3591706second leaf20.065
SRR3591707mature leaf25.429
SRR3591708Shoot apex21.774
SRR3591709Stem31.298
SRR3591710White floral bud35.089
SRR3591711White flower39.226
SRR3591712Green floral bud24.866
SRR3591713Yellow flower42.180
SRP173429 SRR8316895Juvenile bud stage 12.396
SRR8316896Juvenile bud stage 17.688
SRR8316897Juvenile bud stage 9.091
SRR8316894Third green stage 9.078
SRR8316900Third green stage 20.419
SRR8316901Third green stage 18.829
SRR8316898Complete white stage 11.496
SRR8316899Complete white stage 29.821
SRR8316903Complete white stage 23.465
SRR8316902Silver flowering stage15.545
SRR8316904Silver flowering stage21.791
SRR8316905Silver flowering stage10.346
SRR8316906Gold flowering stage 37.516
SRR8316907Gold flowering stage 31.867
SRR8316908Gold flowering stage 37.222
SRP132670SRR6706286Control24.536
SRR6706287Light intensity 50%25.886
SRR6706288Light intensity 20%26.859
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.269
CNS0095593Slightly white alabastrum(diploid) 29.979
CNS0095594Slightly white alabastrum(diploid) 310.957
CNS0095595Whole white alabastrum(diploid) 210.059
CNS0095596Whole white alabastrum(diploid) 310.899
CNS0095597Whole white alabastrum(diploid) 410.329
CNS0095598Silvery flower (diploied) 123.307
CNS0095599Silvery flower (diploied) 212.789
CNS0095600Silvery flower (diploied) 332.069
CNS0095601Golden flower (diploid) 119.166
CNS0095602Golden flower (diploid) 233.812
CNS0095603Golden flower (diploid) 333.081
CNS0095604Slightly white alabastrum(tetraploid) 114.356
CNS0095605Slightly white alabastrum(tetraploid) 211.638
CNS0095606Slightly white alabastrum(tetraploid) 330.434
CNS0095607Whole white alabastrum(tetraploid) 19.175
CNS0095608Whole white alabastrum(tetraploid) 29.640
CNS0095609Whole white alabastrum(tetraploid) 321.226
CNS0095610Silvery flower (tetraploid) 137.204
CNS0095611Silvery flower (tetraploid) 234.594
CNS0095612Silvery flower (tetraploid) 333.691
CNS0095613Golden flower (tetraploid) 127.869
CNS0095614Golden flower (tetraploid) 235.518
CNS0095615Golden flower (tetraploid) 343.916
CRA001975CRR073297Stem 125.496
CRR073298Stem 223.500
CRR073299Stem 318.215
CRR073300Leaf 124.462
CRR073301Leaf 221.206
CRR073302Leaf 314.157
CRR073303Juvenile bud 115.709
CRR073304Juvenile bud 214.588
CRR073305Juvenile bud 325.217
CRR073306Third green 114.573
CRR073307Third green 210.868
CRR073308Third green 314.690
CRR073309Second white 113.070
CRR073310Second white 216.540
CRR073311Second white 317.623
CRR073312Silver flowering 115.212
CRR073313Silver flowering 214.659
CRR073314Silver flowering 313.873
CRR073315Gold flowering 16.845
CRR073316Gold flowering 212.678
CRR073317Gold flowering 39.413
CRR073318Tawny withering 115.853
CRR073319Tawny withering 213.191
CRR073320Tawny withering 312.564