Detail information of GWHGAAZE009138


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAIX10769.10elongation factor 1 alpha [Panax notoginseng]
Swissprottr|Q8GTY0|EF1A4_ARATH0Elongation factor 1-alpha 4
trEMBLtr|R0I523|R0I523_9BRAS0Elongation factor 1-alpha {ECO:0000256|RuleBase:RU004060}
TAIR10AT5G60390.30GTP binding Elongation factor Tu family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene103508844103510291+
GWHAAZE00000002mRNA103508844103510291+
GWHAAZE00000002exon103508844103509305+
GWHAAZE00000002exon103509404103510291+
GWHAAZE00000002CDS103508844103509305+
GWHAAZE00000002CDS103509404103510291+
Transcript Sequence

Network for GWHGAAZE009138

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00009.28GTP_EFTU72211.60E-52
PF03144.26GTP_EFTU_D22483136.70E-14
PF03143.18GTP_EFTU_D33224293.80E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03231EEF1A RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0006414biological_processtranslational elongation
GO:0003746molecular_functiontranslation elongation factor activity
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2330.435
SRR3591706second leaf1065.770
SRR3591707mature leaf630.841
SRR3591708Shoot apex2004.788
SRR3591709Stem1197.777
SRR3591710White floral bud1188.399
SRR3591711White flower1754.671
SRR3591712Green floral bud2050.336
SRR3591713Yellow flower1276.859
SRP173429 SRR8316895Juvenile bud stage 908.384
SRR8316896Juvenile bud stage 1050.463
SRR8316897Juvenile bud stage 541.499
SRR8316894Third green stage 474.607
SRR8316900Third green stage 1859.571
SRR8316901Third green stage 1564.734
SRR8316898Complete white stage 459.160
SRR8316899Complete white stage 1995.270
SRR8316903Complete white stage 623.961
SRR8316902Silver flowering stage397.052
SRR8316904Silver flowering stage444.287
SRR8316905Silver flowering stage205.289
SRR8316906Gold flowering stage 660.041
SRR8316907Gold flowering stage 635.299
SRR8316908Gold flowering stage 755.115
SRP132670SRR6706286Control2133.382
SRR6706287Light intensity 50%2252.408
SRR6706288Light intensity 20%2434.076
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1992.962
CNS0095593Slightly white alabastrum(diploid) 21209.240
CNS0095594Slightly white alabastrum(diploid) 3775.159
CNS0095595Whole white alabastrum(diploid) 2931.157
CNS0095596Whole white alabastrum(diploid) 31092.748
CNS0095597Whole white alabastrum(diploid) 4732.197
CNS0095598Silvery flower (diploied) 1837.992
CNS0095599Silvery flower (diploied) 2800.784
CNS0095600Silvery flower (diploied) 31138.007
CNS0095601Golden flower (diploid) 1628.285
CNS0095602Golden flower (diploid) 21139.510
CNS0095603Golden flower (diploid) 31071.739
CNS0095604Slightly white alabastrum(tetraploid) 11131.982
CNS0095605Slightly white alabastrum(tetraploid) 2958.504
CNS0095606Slightly white alabastrum(tetraploid) 32253.552
CNS0095607Whole white alabastrum(tetraploid) 1515.869
CNS0095608Whole white alabastrum(tetraploid) 2488.333
CNS0095609Whole white alabastrum(tetraploid) 31638.147
CNS0095610Silvery flower (tetraploid) 11001.744
CNS0095611Silvery flower (tetraploid) 2990.732
CNS0095612Silvery flower (tetraploid) 3652.761
CNS0095613Golden flower (tetraploid) 1485.223
CNS0095614Golden flower (tetraploid) 2935.646
CNS0095615Golden flower (tetraploid) 3604.328
CRA001975CRR073297Stem 12316.324
CRR073298Stem 22357.379
CRR073299Stem 33640.077
CRR073300Leaf 12701.996
CRR073301Leaf 22879.069
CRR073302Leaf 34347.354
CRR073303Juvenile bud 14095.009
CRR073304Juvenile bud 23534.987
CRR073305Juvenile bud 35067.694
CRR073306Third green 11153.525
CRR073307Third green 21236.835
CRR073308Third green 31228.380
CRR073309Second white 11346.720
CRR073310Second white 2740.742
CRR073311Second white 3601.880
CRR073312Silver flowering 1943.196
CRR073313Silver flowering 21524.469
CRR073314Silver flowering 31085.041
CRR073315Gold flowering 11001.560
CRR073316Gold flowering 21138.656
CRR073317Gold flowering 31548.419
CRR073318Tawny withering 12696.834
CRR073319Tawny withering 21674.646
CRR073320Tawny withering 32986.181