Detail information of GWHGAAZE009153


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006343464.19.08664E-80PREDICTED: LOB domain-containing protein 11-like [Solanum tuberosum]
Swissprottr|Q9LQR0|LBD1_ARATH2E-65LOB domain-containing protein 1
trEMBLtr|M1CDT5|M1CDT5_SOLTU3E-80Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400065346}
TAIR10AT1G07900.12E-47LOB domain-containing protein 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene103748959103751620-
GWHAAZE00000002mRNA103748959103751620-
GWHAAZE00000002exon103751616103751620-
GWHAAZE00000002exon103749799103749940-
GWHAAZE00000002exon103748959103749315-
GWHAAZE00000002CDS103751616103751620-
GWHAAZE00000002CDS103749799103749940-
GWHAAZE00000002CDS103748959103749315-
Transcript Sequence

Network for GWHGAAZE009153

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03195.15LOB31005.30E-41
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLOB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.498
SRR3591706second leaf0.542
SRR3591707mature leaf0.978
SRR3591708Shoot apex1.122
SRR3591709Stem5.190
SRR3591710White floral bud0.497
SRR3591711White flower0.751
SRR3591712Green floral bud0.108
SRR3591713Yellow flower1.418
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.891
SRR8316897Juvenile bud stage 0.038
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.000
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.270
SRR8316903Complete white stage 0.176
SRR8316902Silver flowering stage0.579
SRR8316904Silver flowering stage0.415
SRR8316905Silver flowering stage0.006
SRR8316906Gold flowering stage 0.364
SRR8316907Gold flowering stage 0.279
SRR8316908Gold flowering stage 2.179
SRP132670SRR6706286Control1.040
SRR6706287Light intensity 50%0.472
SRR6706288Light intensity 20%0.288
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.493
CNS0095594Slightly white alabastrum(diploid) 31.366
CNS0095595Whole white alabastrum(diploid) 20.281
CNS0095596Whole white alabastrum(diploid) 30.098
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.882
CNS0095599Silvery flower (diploied) 21.817
CNS0095600Silvery flower (diploied) 30.095
CNS0095601Golden flower (diploid) 13.607
CNS0095602Golden flower (diploid) 20.943
CNS0095603Golden flower (diploid) 30.836
CNS0095604Slightly white alabastrum(tetraploid) 10.019
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.203
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.119
CNS0095610Silvery flower (tetraploid) 10.186
CNS0095611Silvery flower (tetraploid) 20.080
CNS0095612Silvery flower (tetraploid) 30.940
CNS0095613Golden flower (tetraploid) 10.856
CNS0095614Golden flower (tetraploid) 21.519
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.000
CRR073298Stem 20.123
CRR073299Stem 30.084
CRR073300Leaf 10.000
CRR073301Leaf 20.697
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.109
CRR073306Third green 10.000
CRR073307Third green 20.047
CRR073308Third green 30.207
CRR073309Second white 11.087
CRR073310Second white 20.235
CRR073311Second white 30.213
CRR073312Silver flowering 10.330
CRR073313Silver flowering 20.417
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.798
CRR073316Gold flowering 23.019
CRR073317Gold flowering 32.358
CRR073318Tawny withering 140.009
CRR073319Tawny withering 236.826
CRR073320Tawny withering 314.437