Gene detail

Detail information of GWHGAAZE009160

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002282009.1	PREDICTED: V-type proton ATPase subunit a1 [Vitis vinifera]
Swissprot	tr\|Q8RWZ7\|VHAA1_ARATH	V-type proton ATPase subunit a1
trEMBL	tr\|D7SKS4\|D7SKS4_VITVI	V-type proton ATPase subunit a {ECO:0000256\|RuleBase:RU361189}
TAIR10	AT2G28520.1	vacuolar proton ATPase A1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	103894452	103918130	+
GWHAAZE00000002	mRNA	103894452	103918130	+
GWHAAZE00000002	exon	103894452	103894662	+
GWHAAZE00000002	exon	103897584	103897615	+
GWHAAZE00000002	exon	103901289	103901333	+
GWHAAZE00000002	exon	103902367	103902476	+
GWHAAZE00000002	exon	103903879	103904047	+
GWHAAZE00000002	exon	103904204	103904311	+
GWHAAZE00000002	exon	103905205	103905318	+
GWHAAZE00000002	exon	103905414	103905587	+
GWHAAZE00000002	exon	103905832	103905969	+
GWHAAZE00000002	exon	103906236	103906343	+
GWHAAZE00000002	exon	103906491	103906598	+
GWHAAZE00000002	exon	103906706	103906848	+
GWHAAZE00000002	exon	103907184	103907337	+
GWHAAZE00000002	exon	103913488	103913714	+
GWHAAZE00000002	exon	103914922	103915128	+
GWHAAZE00000002	exon	103915906	103915999	+
GWHAAZE00000002	exon	103916622	103916818	+
GWHAAZE00000002	exon	103916912	103916971	+
GWHAAZE00000002	exon	103917926	103918130	+
GWHAAZE00000002	CDS	103894452	103894662	+
GWHAAZE00000002	CDS	103897584	103897615	+
GWHAAZE00000002	CDS	103901289	103901333	+
GWHAAZE00000002	CDS	103902367	103902476	+
GWHAAZE00000002	CDS	103903879	103904047	+
GWHAAZE00000002	CDS	103904204	103904311	+
GWHAAZE00000002	CDS	103905205	103905318	+
GWHAAZE00000002	CDS	103905414	103905587	+
GWHAAZE00000002	CDS	103905832	103905969	+
GWHAAZE00000002	CDS	103906236	103906343	+
GWHAAZE00000002	CDS	103906491	103906598	+
GWHAAZE00000002	CDS	103906706	103906848	+
GWHAAZE00000002	CDS	103907184	103907337	+
GWHAAZE00000002	CDS	103913488	103913714	+
GWHAAZE00000002	CDS	103914922	103915128	+
GWHAAZE00000002	CDS	103915906	103915999	+
GWHAAZE00000002	CDS	103916622	103916818	+
GWHAAZE00000002	CDS	103916912	103916971	+
GWHAAZE00000002	CDS	103917926	103918130	+

Transcript Sequence
>GWHTAAZE009170 ATGGAGTACATAGACAATTTGCCGCCTATGGATCTGATGCGTTCGGAGAAGATGACCTACGTTCAGCTCATTATGCCGGTCGAATCTGCTCACCGTGCCCTCTCTAACCTCGGCGAACTCGGCCTTCTTCAATTCCGAGATGTAAGATCCCTTCTTAAATTCACACTATTTTATGCAATTGTGTTAGATTCTTGTGATGGCGAGAGTTTAGGGGCAATCAAGTCCTTGAAAGCTGTCCAATCGTTAAATGCAGATAAAAGTCCTTTCCAACGGACATTTGTTAATCAGGGACAGCTTGCAACTATATTGCGGTGTCTGGGGCTTGCGATGCGTTCATCTGGCTTCTTTCGCTATATCTTATGGGTTTTATTGGTTCTTATTGGCTTAACGGTAAACGGTTCCTATTTAGTGTTTTCACATTCATGTTTGGGTTATTCGCAACAGGTAAAAAGATGTGCAGAGATGTCAAGGAAGTTGCGCTTTTTCAAAGAGCAAATACATAAAGCTGGTTTAGTGGCTTCAGCTCGTCCTTCTATGCAAACAGATGTTGAGCTGGAGGATTTAGAGATACAACTTGCTGAGCATGAACATGAACTAATCGAGATGAACGCTAACAGTGAGAAATTACAGCAAACATACAACGAGTTGCTAGAGTTCAAGATGGTGCTTCAGAAGGCGGGTGGCTTCCTTGTATCAAGTAAGGGTCATGCAGTTGCAGAGGAGAGAGAATTAGATGAAAATGTGAATTCCCACGGTGACTATACTGACGCTGGATCTTTACTTGAACAGGAGCTAAAACCTGGAACGTCAAACCAATCTGGTTTAAGGTTTATTAGTGGCATAATATGTAAATCCAAAGTTCTAAGGTTTGAGAGGATGTTGTTCCGTGCTACGAGGGGCAATATGTTTTTCAATCAGTCTCCAGCAGATGATCCAATCATGGATCCTGTAACAGCTGAAATGGTTGAGAAAACAATATTTGTTGTGTTCTTCTCGGGGGAGCAGGCAAGAACGAAAATACTGAAAATTTGCGAAGCATTTGGTGCAAGTTGTTACCCTGTTCCAGAGGACATAACCAAACAGAGGCAAATAACTCGAGAAGTTTCGTCACGTCTTTCTGAATTAGAAACAACCTTGGACGCTGGAATACGTCACCGAAATAAGGCCCTGACTTCCATTGGATTCGAACTGACCAAATGGATGAGCATGGTTAGAAGAGAGAAAGCTGTTTTTGATACATTGAATATGCTGAACTTTGATGTTACAAAGAAGTGTCTCGTGGGAGAGGGATGGTGCCCCATATTTGCAAAAGCTCAGGAGACGTTGCAACGTGCCACATTTGATAGCAACTCACAAGTCGGTATAATATTTCATGTGATGGATACTGTGGATTCACCTCCAACATACTTCAGAACCAACTGCTTTACAAATGCATTTCAAGAAATTGTTGATGCATATGGTGTTGCTAGATACCAGGAAGTAAATCCAGCAGTTTATACTGTCATTACGTTTCCATTTCTCTTTGCCGTGATGTTTGGGGATTGGGGTCACGGAATATGCTTATTGCTAGGAGCATTAGTCCTCGTAGCTCGTGAAAGCAAGCTCGGTTCTCAGCATCTATTCTCCTTGCTTAATGTCACCATCGTTACTGATACTATTTTAAACTTTATTTTCTTTCAGAAACTCGGCAGCTTTATGGAGATGCTATTTGGCGGTCGTTATGTACTCCTTTTGATGTCTCTATTTTCAATTTACTGTGGGTTAATTTACAATGAATTCTTCTCTGTTCCATATCACATATTTGGTGGGTCTGCTTACAAATGCCGAGAAGCTAATTGCAGTGATGCACATTCTGCTGGTTTGGTCAAGTACCGAGATGCATACCCATTTGGTGTGGACCCCAGCTGGCGTGGGAGTCGTACAGAGCTTCCTTTCTTGAACTCTCTCAAAATGAAGATGTCTATTCTGTTGGGTGTGGCTCAGATGAACCTAGGAATCATATTAAGTTACTTCGATGCACGATTCTTTGGAAACTCATTGGATATTAGATTTTTGCAGATCATATTGTTGCTTTCGGCTCTTATTGCAGTGCCATGGATGCTTTTTCCAAAACCTTTTATTTTAAAGAAACTTCACTCTGAGAGATTTCAAGGCCGAACCTACGGGCTACTGGGAACCTCTGATGAGATGGATGTTGAGGTGGAACCTGATTCTGCAAGACAACACCATGAGGAATTCAATTTTAGCGAGATCTTTGTACATCAAATGATACATTCCATTGAGTTTGTGCTTGGTGCAGTTTCAAATACTGCATCATACCTTCGGCTTTGGGCTTTAAGCTTGGCCCACTCAGAATTGTCTACTGTTTTCTACGAGAAAGTCCTCCTCCTTGCCTGGGGGTACGACAACCTGATCATCCGGTTGGTGGGGCTAGCCGTGTTTGCCTTTGCGACGGCATTCATATTACTTATGATGGAAACCCTAAGCGCTTTCCTTCACGCCCTGCGTCTCCATTGGGTTGAATTCCAAAACAAGTTTTACCACGGAGACGGCTACAAGTTCAGACCTTTTTCTTTTGCCACATTAACAGATGACGATGATTAG

Network for GWHGAAZE009160

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0186

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01496.20	V_ATPase_I	145	685	5.00E-168
PF01496.20	V_ATPase_I	684	859	1.50E-67

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02154	ATPeV0A, ATP6N	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Phagosome	map04145
		Lysosome	map04142
		Collecting duct acid secretion	map04966
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:1902600	biological_process	proton transmembrane transport
GO:0033179	cellular_component	proton-transporting V-type ATPase, V0 domain
GO:0000220	cellular_component	vacuolar proton-transporting V-type ATPase, V0 domain
GO:0015078	molecular_function	proton transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.959
	SRR3591706	second leaf	17.773
	SRR3591707	mature leaf	15.521
	SRR3591708	Shoot apex	17.324
	SRR3591709	Stem	25.344
	SRR3591710	White floral bud	25.945
	SRR3591711	White flower	23.268
	SRR3591712	Green floral bud	31.909
	SRR3591713	Yellow flower	19.407
SRP173429	SRR8316895	Juvenile bud stage	17.337
	SRR8316896	Juvenile bud stage	24.846
	SRR8316897	Juvenile bud stage	13.539
	SRR8316894	Third green stage	11.688
	SRR8316900	Third green stage	35.255
	SRR8316901	Third green stage	35.496
	SRR8316898	Complete white stage	17.562
	SRR8316899	Complete white stage	37.526
	SRR8316903	Complete white stage	22.783
	SRR8316902	Silver flowering stage	11.861
	SRR8316904	Silver flowering stage	19.621
	SRR8316905	Silver flowering stage	8.015
	SRR8316906	Gold flowering stage	24.424
	SRR8316907	Gold flowering stage	25.754
	SRR8316908	Gold flowering stage	25.910
SRP132670	SRR6706286	Control	18.939
	SRR6706287	Light intensity 50%	23.180
	SRR6706288	Light intensity 20%	24.254
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.357
	CNS0095593	Slightly white alabastrum(diploid) 2	16.209
	CNS0095594	Slightly white alabastrum(diploid) 3	14.635
	CNS0095595	Whole white alabastrum(diploid) 2	19.665
	CNS0095596	Whole white alabastrum(diploid) 3	22.683
	CNS0095597	Whole white alabastrum(diploid) 4	19.403
	CNS0095598	Silvery flower (diploied) 1	12.689
	CNS0095599	Silvery flower (diploied) 2	10.889
	CNS0095600	Silvery flower (diploied) 3	27.286
	CNS0095601	Golden flower (diploid) 1	8.763
	CNS0095602	Golden flower (diploid) 2	23.278
	CNS0095603	Golden flower (diploid) 3	22.813
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.503
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.073
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.710
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.955
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.380
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.374
	CNS0095610	Silvery flower (tetraploid) 1	27.191
	CNS0095611	Silvery flower (tetraploid) 2	21.621
	CNS0095612	Silvery flower (tetraploid) 3	22.266
	CNS0095613	Golden flower (tetraploid) 1	13.035
	CNS0095614	Golden flower (tetraploid) 2	21.468
	CNS0095615	Golden flower (tetraploid) 3	18.383
CRA001975	CRR073297	Stem 1	27.719
	CRR073298	Stem 2	23.657
	CRR073299	Stem 3	16.188
	CRR073300	Leaf 1	35.381
	CRR073301	Leaf 2	31.238
	CRR073302	Leaf 3	28.563
	CRR073303	Juvenile bud 1	25.591
	CRR073304	Juvenile bud 2	26.311
	CRR073305	Juvenile bud 3	27.662
	CRR073306	Third green 1	14.591
	CRR073307	Third green 2	13.273
	CRR073308	Third green 3	16.856
	CRR073309	Second white 1	10.916
	CRR073310	Second white 2	15.100
	CRR073311	Second white 3	13.048
	CRR073312	Silver flowering 1	8.725
	CRR073313	Silver flowering 2	8.844
	CRR073314	Silver flowering 3	11.286
	CRR073315	Gold flowering 1	6.821
	CRR073316	Gold flowering 2	13.424
	CRR073317	Gold flowering 3	5.693
	CRR073318	Tawny withering 1	22.026
	CRR073319	Tawny withering 2	16.304
	CRR073320	Tawny withering 3	27.532