Gene detail

Detail information of GWHGAAZE009161

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006366123.1	0	PREDICTED: DDB1- and CUL4-associated factor 8-like [Solanum tuberosum]
trEMBL	tr\|M1AVT8\|M1AVT8_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400031540}
TAIR10	AT3G45620.2	6E-160	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	103932990	103936997	+
GWHAAZE00000002	mRNA	103932990	103936997	+
GWHAAZE00000002	exon	103932990	103933241	+
GWHAAZE00000002	exon	103934667	103934810	+
GWHAAZE00000002	exon	103935394	103936083	+
GWHAAZE00000002	exon	103936749	103936997	+
GWHAAZE00000002	CDS	103932990	103933241	+
GWHAAZE00000002	CDS	103934667	103934810	+
GWHAAZE00000002	CDS	103935394	103936083	+
GWHAAZE00000002	CDS	103936749	103936997	+

Transcript Sequence
>GWHTAAZE009171 GCCGTTATGAAGCGAATCGATCTGTATGGGAAATTAAATGGGCATGAGGGTTGTGTAAACACAGTTGAATTCAATAATACCGGTGACCACCTAGTGTCCGGCTCTGATGACCTGAAAATTATGTTCTGGAACTGGGAAGCTAAAATTTTGAAATTTTCATATCCCTCTGGCCATGTAGACAACATTTTCCAGACCAGAATCATGCCGTTCACTGATGACCGGAATATAGTAACTTCTGCTGCTGATGGTCAGGTCAGGCTTGGTGAGATATTGGAGAACAGTCATGTGGAAACGAAAAGGCTAGGCAGACACGAAGGTTCAGTACACGACCTTGCTGTGGAGCCCGGATCCTCCCGCATATTTTATAGTTGTGGAGAGGATGGTTTTGTTCAACATTTTGATTTGCGAAGTAATTCTGCAACAAAACTTTTCTGCTGCTCCTCTTTCACAGAAAACAGTGAGCAGTCTTCGAGTAGCCTGAGGTTGAACGCCATTGTCATTGACCCAAGAAATCCTCATTATTTCGCTATAGGAGGTTCCGATGTATATGCGCGCATTTATGACATTAGAAAGTACCAAAAAGACCCATCAAGTAATTTAGATAGCCCAGTCAGCTCAGTTTGCCCCCATCACCTAATCAACACTCATGATGTTCGAATCACTGGATTGGCCTACTCTAGCACAAGTGAATTGCTCGTTTCCTACAATGATGAGCTGATCTACTTGTTTCAGAAGAATATGGGGCTGGGTCCCACCCCATTGTCGATCAAGAATGAAGATTTGAGTAAATTGGAAGAGCCGTTGGTTTACTCTGGTCATAGGAATTCAAGAACGGTCAAAGGAGTGAGTTTCTTTGGTCCCAATGATGACTATGTCTTGAGTGGGTCCGATTGTGGCCATATCTTTATTTGGAAGAAAAAAGGAGCAGAACTTGTGCGTGTTATGGTAGGTGATCGGCATATAGTAAATCATCTGGAGCCGCATCCATATCTGCCTGTTCTTGCTACTTGTGGAATAGAAAAGAATATCAAGCTCTGGGCACCGATGTCTAACAATGTTCGTCCTCTCCCTCGTGATTTAGAAGAGATTATGGAGTCTAACAAGCAAGGTAGAGAGGACCATTCACGAGTTACACTGACACCTGATGTTATAATGCACGTTTTAAGGCTTCATAGGAGGCAAGCGTTGGCTTATATAGAGAGAAGATACAATAGAGGCGAGATCGATAGTGATGAAGAGGCTGAAGGGGAGGCTTTTTTTGCAGGATTTTCAGATGGTGATGTCTCTTCTGAGGAGGGCAGTACTGGAAATTCCAGAGATTGCAACATTAGCTGA

Network for GWHGAAZE009161

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	11	44	7.50E-05
PF00400.33	WD40	269	305	0.00033

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.018
	SRR3591706	second leaf	10.116
	SRR3591707	mature leaf	15.448
	SRR3591708	Shoot apex	20.308
	SRR3591709	Stem	29.591
	SRR3591710	White floral bud	20.047
	SRR3591711	White flower	18.890
	SRR3591712	Green floral bud	18.527
	SRR3591713	Yellow flower	14.586
SRP173429	SRR8316895	Juvenile bud stage	12.013
	SRR8316896	Juvenile bud stage	19.947
	SRR8316897	Juvenile bud stage	5.573
	SRR8316894	Third green stage	8.666
	SRR8316900	Third green stage	19.414
	SRR8316901	Third green stage	16.869
	SRR8316898	Complete white stage	8.485
	SRR8316899	Complete white stage	32.632
	SRR8316903	Complete white stage	17.122
	SRR8316902	Silver flowering stage	6.727
	SRR8316904	Silver flowering stage	13.509
	SRR8316905	Silver flowering stage	4.679
	SRR8316906	Gold flowering stage	14.695
	SRR8316907	Gold flowering stage	17.296
	SRR8316908	Gold flowering stage	9.578
SRP132670	SRR6706286	Control	12.212
	SRR6706287	Light intensity 50%	12.346
	SRR6706288	Light intensity 20%	12.899
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.428
	CNS0095593	Slightly white alabastrum(diploid) 2	11.134
	CNS0095594	Slightly white alabastrum(diploid) 3	10.445
	CNS0095595	Whole white alabastrum(diploid) 2	8.432
	CNS0095596	Whole white alabastrum(diploid) 3	5.561
	CNS0095597	Whole white alabastrum(diploid) 4	7.087
	CNS0095598	Silvery flower (diploied) 1	21.294
	CNS0095599	Silvery flower (diploied) 2	15.889
	CNS0095600	Silvery flower (diploied) 3	22.710
	CNS0095601	Golden flower (diploid) 1	17.621
	CNS0095602	Golden flower (diploid) 2	21.079
	CNS0095603	Golden flower (diploid) 3	19.340
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.839
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.467
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.839
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.554
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.925
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.429
	CNS0095610	Silvery flower (tetraploid) 1	22.392
	CNS0095611	Silvery flower (tetraploid) 2	20.462
	CNS0095612	Silvery flower (tetraploid) 3	14.382
	CNS0095613	Golden flower (tetraploid) 1	9.234
	CNS0095614	Golden flower (tetraploid) 2	16.009
	CNS0095615	Golden flower (tetraploid) 3	11.496
CRA001975	CRR073297	Stem 1	26.103
	CRR073298	Stem 2	22.944
	CRR073299	Stem 3	15.642
	CRR073300	Leaf 1	22.391
	CRR073301	Leaf 2	18.992
	CRR073302	Leaf 3	16.418
	CRR073303	Juvenile bud 1	13.213
	CRR073304	Juvenile bud 2	9.797
	CRR073305	Juvenile bud 3	17.696
	CRR073306	Third green 1	1.916
	CRR073307	Third green 2	4.082
	CRR073308	Third green 3	4.239
	CRR073309	Second white 1	4.694
	CRR073310	Second white 2	3.893
	CRR073311	Second white 3	2.614
	CRR073312	Silver flowering 1	2.102
	CRR073313	Silver flowering 2	1.436
	CRR073314	Silver flowering 3	1.024
	CRR073315	Gold flowering 1	7.176
	CRR073316	Gold flowering 2	13.321
	CRR073317	Gold flowering 3	9.127
	CRR073318	Tawny withering 1	18.850
	CRR073319	Tawny withering 2	16.233
	CRR073320	Tawny withering 3	18.953