Gene detail

Detail information of GWHGAAZE009169

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281895.2	0	PREDICTED: uncharacterized protein LOC100267264 isoform X1 [Vitis vinifera]
trEMBL	tr\|D7SKR3\|D7SKR3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI16241.3}
TAIR10	AT3G45630.1	3E-134	RNA binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	104178532	104194346	+
GWHAAZE00000002	mRNA	104178532	104194346	+
GWHAAZE00000002	exon	104178532	104178605	+
GWHAAZE00000002	exon	104179696	104179798	+
GWHAAZE00000002	exon	104184792	104184919	+
GWHAAZE00000002	exon	104185317	104185503	+
GWHAAZE00000002	exon	104185571	104185671	+
GWHAAZE00000002	exon	104186282	104186365	+
GWHAAZE00000002	exon	104186442	104186490	+
GWHAAZE00000002	exon	104186613	104186704	+
GWHAAZE00000002	exon	104188896	104189034	+
GWHAAZE00000002	exon	104189284	104189363	+
GWHAAZE00000002	exon	104189592	104190877	+
GWHAAZE00000002	exon	104190950	104190997	+
GWHAAZE00000002	exon	104191517	104191630	+
GWHAAZE00000002	exon	104192096	104192630	+
GWHAAZE00000002	exon	104192805	104192855	+
GWHAAZE00000002	exon	104193137	104193194	+
GWHAAZE00000002	exon	104194034	104194346	+
GWHAAZE00000002	CDS	104178532	104178605	+
GWHAAZE00000002	CDS	104179696	104179798	+
GWHAAZE00000002	CDS	104184792	104184919	+
GWHAAZE00000002	CDS	104185317	104185503	+
GWHAAZE00000002	CDS	104185571	104185671	+
GWHAAZE00000002	CDS	104186282	104186365	+
GWHAAZE00000002	CDS	104186442	104186490	+
GWHAAZE00000002	CDS	104186613	104186704	+
GWHAAZE00000002	CDS	104188896	104189034	+
GWHAAZE00000002	CDS	104189284	104189363	+
GWHAAZE00000002	CDS	104189592	104190877	+
GWHAAZE00000002	CDS	104190950	104190997	+
GWHAAZE00000002	CDS	104191517	104191630	+
GWHAAZE00000002	CDS	104192096	104192630	+
GWHAAZE00000002	CDS	104192805	104192855	+
GWHAAZE00000002	CDS	104193137	104193194	+
GWHAAZE00000002	CDS	104194034	104194060	+
GWHAAZE00000002	three_prime_UTR	104194061	104194346	+

Transcript Sequence
>GWHTAAZE009179 ATGACAACTTCGCACGAAGTGAACACATGTAACTCTCCGAGTGCAACACAACTACAACACCCTGAACTCGAGGGGCAACCAACCATGAGCGACGAAGGAGAAAAGACTTGCCCTCTCTGCGCTGAAGAGATGGATTTGACTGATCAGCAATTGAAGCCTTGCAAGTGCGGTTATGAGATCTGTGTTTGGTGCTGGCACCACATAATGAACATGGCTGAGAAGGATGAGACAGAAGGGCGGTGTCCAGCGTGTCGTACTCCTTATAACAAGGAAAAGATAGTTGGGATGGCAGCAAAGTGTGAAAGGATGGTGGCTGAAATAAATATGGATAAAAAAGGGAAGTCACATAAGACTAAAAGTAAAATATCCGAAGGACGGAAGCAACTTAGCAGTGTTCGAGTGATTCAGAGGAACCTTGTTTACGTTGTTGGATTGCCTCTTAATTTAGCAGATGAAGATGTGCATTCTTTGTCTCTCATCAGTCTCTTTTATCGGAAAGAATATTTTGGTCAGTACGGGAAGGTGCTGAAGGTGTCTATATCTCGTACAGCAGCTGGTGCTATTCAACATTTTGCAAACAGTACTTGTAGTGTATATATTACATACTCAAAGGAAGATGAAGCAGTTCGTTGTATTCAGTCAATACATGGGTTTACCTTGGAGGGTAGATCTTTGAGGGCTTGCTTCGGGACAACAAAATATTGTCATGCATGGCTGAGAAGCATGCCTTGCAGCAATCCTGATTGTCTGTACCTGCATGAGATTGGTTTACAAGAGGATAGTTTTACTAAAGATGAAATAATATCAGCTTACACAAGGAGTAGAGTTCAGCAAATTACTGGTGCTACAAACGATATGCAGCGGCGTTCGGGGACTATGTTACCTCCACCAGCAGACGAATACTGCAATAATGGCCCCACTTCCTCTGGAAATCCTACTAATAAAATTCCTGCAAATAATCCAGTTAGCGGTGTTAGAGTTTCTCCTCCACCTAGTAGCTCAGGTAGACCTGTAGCTCTTCCGGCGGCAGCTTCATGGGGAATGCGAGCCTCTAATAGTCAGCCACCTCCTGCAAGTTTACCATGTTCCAATGGACCTTCCAAGGAGAAACCCGATATATGTAGTGGTTCGCTGGCGTTTTCAACGGCAGTGGCTAATCCAACTCAGGTTTCTATACAGCGTACTGATGTTGGAAAGAAGATTAATGAAGAAAGCCGTCCTACACAACAAAAAGGTAAAATTGAGACTTTGGGATCTGTGAAACAGTGTGTGGATGTAGATCATCGAGGAACTGCACCCAATACTCCATTTAAGGATCAAGATAAATCTATAACTATGCCTACCAGTATTACTAGTTCTATTGGTACCTCTGTGCGGGCAAGTTGTCCAGAAAAAGATATGAATATTGCTGCTGAGGGAAAGATTCCGAATTTATGTTCTGATATGTCATTAGTGAGCATTGATAGACAAGGGTTACAAATAACCGTTTCTGAGCAGTTTAGAGAGCCAAATAAGGATATTGGCGATACAAGAGGACCATCTGAATTGAGATCAGATTTGCAGACTCAAGTAGCTGAAGTTGGAGTCCGTGAAGTGGAGGAGGATCTGCTTTCTTTTGATGACCAGAGACTTAAGGATCCTGAAGTTTCCTCTCACTTCTTGCCTAACTTATCTCAGCCTTTCCATCTTCCAAATGATTCTAGGGTTTATTCTCCCCACGAAGCTTATGGGTCATCAATTAGTGTCAATGTAGAACCTCAAGTTGTAGATAAGAAACTTGACAAGACTTTACTTTCACATGCATCTAGTATCCCAGTAATATCTAATGGATACCATGAGGATATGGTCAGTGGTTCTTCTCATTGGGAAAACGGTTTTCATCATTCTTATTTGCTTACAAATGAAGTGAAAAACAATGTTGCAGTAGATATGGGAGAGAGCAGCATAATATCTAATATTTTGTCAATGGACTCCGAGTCTTGGGATCAATCATTAACTTCACCCCAGAATATAGCTAAATTGTTGGGTCCAAAAAACGATAAACAGCAGGTACCTCTTAAAGGATCAAATTCATGGAAGGCACAGAACAGCAATCAATCCAGGTTCTCATTTGCAAGAGAAGAAGAGAGTATAAATCAAATATCTAATTTTGAACAGTCTCTAAGTAGCATTGGTCAAGCTCATATGAATCGCCCTTTCAGCAGAGATTTTGTCAATAACAGAGATTTTTATGGTAACAGTAATGGGTTTTCCTCGGTTGGTATTGAGGAACTTGATAATTTTGCCAGTAGCCATCCTAATATCTCCTCTAATAAGCTTCCAGTGTTGGCCGCTAAAGGAATCATGCCTGTTCTTTGCTTCATTATTACAGGCTCAAGATCTCATATATCAGCCCCTCCTGGATTTTCAATGCCCAACAGAGCACCACCCCCAGGCTTTAGTTCCCATGAGAGACTGGAACAAACTTTTGACAACACGCTGCCAGGGAATCATGTGCTTGACTCATCCTCCTTGAGGAAACAATACCAGGCACCACCAGCTTTTAATTCAGGTGGCACCACCGGGGATATCGAGTTCATGGATCCGGCAATCCTGGCAGTTGGTAAGGGTAGACTTGCAAGCACCCTTAACACCACAAGCTTGGACATAAGATCAAATTTCCCTCAATTAAACACTTTCGAAAATGACGCAAGACTTCAATTACTTATGCAAAGATCTCTTTCACCGCATCAGAGCCAGAGATACGCCGAAATGGGCGATAGTTTTTCTCAGCGGACCGACGCGTATGGATTACCTTCACGCATGATTGACCAAAATCTGACCAGTAATTTATCGCCATATTCACATCTTACAATGAACGGGGTATTGCCAAATGGCCACTGGGATGGTTGGAGTGAGGTCCAGAGTGGAAATGATTTGGGCATGGTGGAGCTCCTCAGAAACGAGAGATTGGGACTAAATAAGTATTATGGTGGTGGTTATGAGGATTCAAATTACCGGATGTCCGGTTCTGGGGACCTATTGCTGATTGGTGAGGTACTGAACCCTCTCAAACAGAACCTAACCAGCAGGCTCAGGATGCGAAGCGCAAAGGTCTTGCCTGGGCCTAGTTGCAAGGCTCAAGGCGAGGCAAAGCCAGCCGAGATCGAGGCTTGATATGAAGGTTGAACTAAAAGCAGGGTAGCATTCTATGATCAATCAGCAGGTGAATCTGCTCCTTATCATACAGGAGAATGATATGATAAAAAAAACTCATAATTGAATAGGATGAAAATTGCAAATATATTTTCTTTTTGTGTGGTATTTATTCTAAGTCATACCAATATTGAACTCAAGTTTAGAAAGAAACTTTTATATGATAATGCTATCAGCCTCTACTTAAATTGCTCACAAGGAGTTGAGTTGAAAGAGTTTAGAGTATAGCCACGTAACTTGTTTTGCC

Network for GWHGAAZE009169

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14570.7	zf-RING_4	37	89	4.80E-21
PF00076.23	RRM_1	166	226	0.00019

Protein Sequence

>GWHPAAZE009174
MTTSHEVNTCNSPSATQLQHPELEGQPTMSDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMNMAEKDETEGRCPACRTPYNKEKIVGMAAKCERMVAEINMDKKGKSHKTKSKISEGRKQLSSVRVIQRNLVYVVGLPLNLADEDVHSLSLISLFYRKEYFGQYGKVLKVSISRTAAGAIQHFANSTCSVYITYSKEDEAVRCIQSIHGFTLEGRSLRACFGTTKYCHAWLRSMPCSNPDCLYLHEIGLQEDSFTKDEIISAYTRSRVQQITGATNDMQRRSGTMLPPPADEYCNNGPTSSGNPTNKIPANNPVSGVRVSPPPSSSGRPVALPAAASWGMRASNSQPPPASLPCSNGPSKEKPDICSGSLAFSTAVANPTQVSIQRTDVGKKINEESRPTQQKGKIETLGSVKQCVDVDHRGTAPNTPFKDQDKSITMPTSITSSIGTSVRASCPEKDMNIAAEGKIPNLCSDMSLVSIDRQGLQITVSEQFREPNKDIGDTRGPSELRSDLQTQVAEVGVREVEEDLLSFDDQRLKDPEVSSHFLPNLSQPFHLPNDSRVYSPHEAYGSSISVNVEPQVVDKKLDKTLLSHASSIPVISNGYHEDMVSGSSHWENGFHHSYLLTNEVKNNVAVDMGESSIISNILSMDSESWDQSLTSPQNIAKLLGPKNDKQQVPLKGSNSWKAQNSNQSRFSFAREEESINQISNFEQSLSSIGQAHMNRPFSRDFVNNRDFYGNSNGFSSVGIEELDNFASSHPNISSNKLPVLAAKGIMPVLCFIITGSRSHISAPPGFSMPNRAPPPGFSSHERLEQTFDNTLPGNHVLDSSSLRKQYQAPPAFNSGGTTGDIEFMDPAILAVGKGRLASTLNTTSLDIRSNFPQLNTFENDARLQLLMQRSLSPHQSQRYAEMGDSFSQRTDAYGLPSRMIDQNLTSNLSPYSHLTMNGVLPNGHWDGWSEVQSGNDLGMVELLRNERLGLNKYYGGGYEDSNYRMSGSGDLLLIGEVLNPLKQNLTSRLRMRSAKVLPGPSCKAQGEAKPAEIEA

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
K10643	CNOT4, NOT4, MOT2	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.051
	SRR3591706	second leaf	20.338
	SRR3591707	mature leaf	45.767
	SRR3591708	Shoot apex	18.958
	SRR3591709	Stem	34.044
	SRR3591710	White floral bud	33.339
	SRR3591711	White flower	30.476
	SRR3591712	Green floral bud	32.009
	SRR3591713	Yellow flower	27.490
SRP173429	SRR8316895	Juvenile bud stage	14.605
	SRR8316896	Juvenile bud stage	19.609
	SRR8316897	Juvenile bud stage	10.261
	SRR8316894	Third green stage	10.587
	SRR8316900	Third green stage	25.401
	SRR8316901	Third green stage	24.870
	SRR8316898	Complete white stage	10.057
	SRR8316899	Complete white stage	28.662
	SRR8316903	Complete white stage	21.906
	SRR8316902	Silver flowering stage	12.327
	SRR8316904	Silver flowering stage	18.694
	SRR8316905	Silver flowering stage	8.382
	SRR8316906	Gold flowering stage	24.939
	SRR8316907	Gold flowering stage	21.936
	SRR8316908	Gold flowering stage	23.403
SRP132670	SRR6706286	Control	21.388
	SRR6706287	Light intensity 50%	22.796
	SRR6706288	Light intensity 20%	22.745
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.578
	CNS0095593	Slightly white alabastrum(diploid) 2	14.593
	CNS0095594	Slightly white alabastrum(diploid) 3	14.296
	CNS0095595	Whole white alabastrum(diploid) 2	16.786
	CNS0095596	Whole white alabastrum(diploid) 3	13.876
	CNS0095597	Whole white alabastrum(diploid) 4	14.978
	CNS0095598	Silvery flower (diploied) 1	18.610
	CNS0095599	Silvery flower (diploied) 2	10.891
	CNS0095600	Silvery flower (diploied) 3	26.818
	CNS0095601	Golden flower (diploid) 1	11.996
	CNS0095602	Golden flower (diploid) 2	23.542
	CNS0095603	Golden flower (diploid) 3	23.076
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.322
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.268
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.654
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.810
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.813
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.918
	CNS0095610	Silvery flower (tetraploid) 1	27.730
	CNS0095611	Silvery flower (tetraploid) 2	27.706
	CNS0095612	Silvery flower (tetraploid) 3	21.186
	CNS0095613	Golden flower (tetraploid) 1	15.985
	CNS0095614	Golden flower (tetraploid) 2	24.563
	CNS0095615	Golden flower (tetraploid) 3	23.436
CRA001975	CRR073297	Stem 1	15.250
	CRR073298	Stem 2	15.134
	CRR073299	Stem 3	7.645
	CRR073300	Leaf 1	17.298
	CRR073301	Leaf 2	17.410
	CRR073302	Leaf 3	5.681
	CRR073303	Juvenile bud 1	6.947
	CRR073304	Juvenile bud 2	6.184
	CRR073305	Juvenile bud 3	8.522
	CRR073306	Third green 1	7.688
	CRR073307	Third green 2	4.500
	CRR073308	Third green 3	8.709
	CRR073309	Second white 1	4.233
	CRR073310	Second white 2	9.212
	CRR073311	Second white 3	8.438
	CRR073312	Silver flowering 1	7.327
	CRR073313	Silver flowering 2	6.233
	CRR073314	Silver flowering 3	6.770
	CRR073315	Gold flowering 1	3.191
	CRR073316	Gold flowering 2	7.946
	CRR073317	Gold flowering 3	1.649
	CRR073318	Tawny withering 1	7.664
	CRR073319	Tawny withering 2	10.082
	CRR073320	Tawny withering 3	7.234