Gene detail

Detail information of GWHGAAZE009175

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009768362.1	3.2182E-115	PREDICTED: probable trans-2-enoyl-CoA reductase, mitochondrial [Nicotiana sylvestris]
Swissprot	tr\|Q8LCU7\|MECR_ARATH	2E-109	Probable trans-2-enoyl-CoA reductase, mitochondrial (Precursor)
trEMBL	tr\|F6GTW5\|F6GTW5_VITVI	7E-114	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43629.1}
TAIR10	AT3G45770.1	3E-91	Polyketide synthase, enoylreductase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	104407068	104412794	-
GWHAAZE00000002	mRNA	104407068	104412794	-
GWHAAZE00000002	exon	104407068	104407161	-
GWHAAZE00000002	exon	104408199	104408317	-
GWHAAZE00000002	exon	104408470	104408548	-
GWHAAZE00000002	exon	104408649	104408725	-
GWHAAZE00000002	exon	104408893	104409094	-
GWHAAZE00000002	exon	104409186	104409249	-
GWHAAZE00000002	exon	104409590	104409672	-
GWHAAZE00000002	exon	104410307	104410409	-
GWHAAZE00000002	exon	104410694	104410837	-
GWHAAZE00000002	exon	104411403	104411534	-
GWHAAZE00000002	exon	104412013	104412110	-
GWHAAZE00000002	exon	104412616	104412794	-
GWHAAZE00000002	CDS	104412616	104412794	-
GWHAAZE00000002	CDS	104412013	104412110	-
GWHAAZE00000002	CDS	104411403	104411534	-
GWHAAZE00000002	CDS	104410694	104410837	-
GWHAAZE00000002	CDS	104410307	104410409	-
GWHAAZE00000002	CDS	104409590	104409672	-
GWHAAZE00000002	CDS	104409186	104409249	-
GWHAAZE00000002	CDS	104408893	104409094	-
GWHAAZE00000002	CDS	104408649	104408725	-
GWHAAZE00000002	CDS	104408470	104408548	-
GWHAAZE00000002	CDS	104408199	104408317	-
GWHAAZE00000002	CDS	104407068	104407161	-

Transcript Sequence
>GWHTAAZE009185 ATGGCGTCGATGAGATTCGCAATGCAGAAAGCAATCCATGGAACTTTTATATCCTCACACTACCTCCTTCCCCGTACTAAAACAAAAATCTTCACCGTCCGATCTTTCTCCGCCGCTATGTCGCCGCCCTCCACGGCCATCTTCTACGACCAGCAAGGCCCTCCAGATTCCGTCACCAGAATAATTGAGATTCCGCCAGGTGAAATTAAGGAAAATGACGTGTGTGTTAGAATGCTTGCTGCTCCTATTAATCCCTCTGATATCAATAGAATTGAAGGAGTGTACCCTGTGAGGCCACCAGTGCCCGCAGTTGGGGGTTATGAGGGTGTTGGTGAGGTACACACATTAGGCTCCGCGGTAAAGGGTCTATCTCTTGGTGATTGGGTCATCCCTTCTCCACCTTCATCTGGGACATGGCAGACATATGTTGTAAAAGACCAGGCTGCCTGGCACAAAATTGATAAAGAAACACCAATGGAATATGCTGCTACTGTTACTGTCAATCCTTTGACTGCTCTAAGAATGCTCGAGGACTTTGTGGATCTAAAATCAGGTGATGCTGTTGTGCAAAATGGGGCCACAAGCATTGTGGGACAGTGCATCATTCAACTTGCCCGAATCCGTGGAATCCACAGTATAAATATTATACGGGACAGAATTATGGTCTATCTTGCAAGTTTAGGGTGTGGGAATTACTGGAAAAAGCTCGATAGTAAGCAGAGGAAGTACTTGGAAGAGGGTATGCCCCTGCTAATTGGGGGATCCTTTGATGATTTTGGCATGGCAGCAAATGGTTGTTACAAGCTGAAGATACTTCGATTTGCTTCAAGCAGAAGAAGATACTTCGAATTTGCTTCAAGCAGGAATGTTCCGGATCCTTATCTGTTGTGTTCTTCTTGTTACAGGGCGGGGTCTGATGAAGTAAGAGAAAAACTCAAGAAACTTGGTGCCGATGAAGTGTTTACTGAGAGCGAACTGCAAGTGAAAAACGTCAAAGGTCTCCTGGCTAATACACCTGAACCTGCTTTGGGGTTTAACTGTGTTGGCGGAAATGCTGCATCTTTGGTTCTCAAATTCTTGAGGCAAGGAGGGACCATGGTGACATATGGTGGAATGTCTAAGAAGCCTATAACAGTATCAACTTCATCCTTCATATTTAAGGACCTTTCACTAAGGGGGTTCTGGTTGCAGAAGTGGATGAGTTCGGACAAGGCAAAAGAGTGCAGAGTTATGCTTGATTACCTTTTGGGTCTAGCACGCGAAGGAAAATTGACATACGAGATGGAGCTTGTGCCTTTCACTGAGTTTAAAACTGCACTGGACAAAGCCCTTGGAAAGCTAGGAAGCCAACCTAAACAAGTCATCAAATTCTAA

Network for GWHGAAZE009175

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	72	134	1.10E-07
PF00107.27	ADH_zinc_N	304	399	7.50E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07512	MECR, NRBF1	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Fatty acid elongation	map00062

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.397
	SRR3591706	second leaf	5.906
	SRR3591707	mature leaf	6.350
	SRR3591708	Shoot apex	9.613
	SRR3591709	Stem	6.637
	SRR3591710	White floral bud	2.923
	SRR3591711	White flower	3.337
	SRR3591712	Green floral bud	6.491
	SRR3591713	Yellow flower	1.080
SRP173429	SRR8316895	Juvenile bud stage	6.083
	SRR8316896	Juvenile bud stage	12.197
	SRR8316897	Juvenile bud stage	4.947
	SRR8316894	Third green stage	5.053
	SRR8316900	Third green stage	11.842
	SRR8316901	Third green stage	12.436
	SRR8316898	Complete white stage	2.446
	SRR8316899	Complete white stage	13.585
	SRR8316903	Complete white stage	5.082
	SRR8316902	Silver flowering stage	1.926
	SRR8316904	Silver flowering stage	2.256
	SRR8316905	Silver flowering stage	1.466
	SRR8316906	Gold flowering stage	4.693
	SRR8316907	Gold flowering stage	5.073
	SRR8316908	Gold flowering stage	4.349
SRP132670	SRR6706286	Control	12.841
	SRR6706287	Light intensity 50%	11.814
	SRR6706288	Light intensity 20%	13.166
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.991
	CNS0095593	Slightly white alabastrum(diploid) 2	9.821
	CNS0095594	Slightly white alabastrum(diploid) 3	10.632
	CNS0095595	Whole white alabastrum(diploid) 2	8.219
	CNS0095596	Whole white alabastrum(diploid) 3	8.506
	CNS0095597	Whole white alabastrum(diploid) 4	4.980
	CNS0095598	Silvery flower (diploied) 1	7.443
	CNS0095599	Silvery flower (diploied) 2	4.933
	CNS0095600	Silvery flower (diploied) 3	6.886
	CNS0095601	Golden flower (diploid) 1	6.145
	CNS0095602	Golden flower (diploid) 2	5.087
	CNS0095603	Golden flower (diploid) 3	4.234
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.531
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.683
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.673
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.170
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.716
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.495
	CNS0095610	Silvery flower (tetraploid) 1	6.537
	CNS0095611	Silvery flower (tetraploid) 2	5.983
	CNS0095612	Silvery flower (tetraploid) 3	5.603
	CNS0095613	Golden flower (tetraploid) 1	2.792
	CNS0095614	Golden flower (tetraploid) 2	6.146
	CNS0095615	Golden flower (tetraploid) 3	1.668
CRA001975	CRR073297	Stem 1	9.137
	CRR073298	Stem 2	8.938
	CRR073299	Stem 3	6.770
	CRR073300	Leaf 1	12.262
	CRR073301	Leaf 2	10.732
	CRR073302	Leaf 3	10.871
	CRR073303	Juvenile bud 1	9.293
	CRR073304	Juvenile bud 2	8.346
	CRR073305	Juvenile bud 3	10.321
	CRR073306	Third green 1	1.761
	CRR073307	Third green 2	2.106
	CRR073308	Third green 3	1.727
	CRR073309	Second white 1	1.404
	CRR073310	Second white 2	2.236
	CRR073311	Second white 3	2.135
	CRR073312	Silver flowering 1	0.774
	CRR073313	Silver flowering 2	0.664
	CRR073314	Silver flowering 3	0.516
	CRR073315	Gold flowering 1	7.484
	CRR073316	Gold flowering 2	8.033
	CRR073317	Gold flowering 3	4.230
	CRR073318	Tawny withering 1	7.726
	CRR073319	Tawny withering 2	5.060
	CRR073320	Tawny withering 3	6.466