Gene detail

Detail information of GWHGAAZE009186

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281919.1	0	PREDICTED: ornithine carbamoyltransferase, chloroplastic [Vitis vinifera]
Swissprot	tr\|Q43814\|OTC_PEA	3E-173	Ornithine carbamoyltransferase, chloroplastic (Precursor)
trEMBL	tr\|E0CQF4\|E0CQF4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI19723.3}
TAIR10	AT1G75330.1	9E-133	ornithine carbamoyltransferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	104671161	104676911	-
GWHAAZE00000002	mRNA	104671161	104676911	-
GWHAAZE00000002	exon	104676701	104676911	-
GWHAAZE00000002	exon	104675753	104676086	-
GWHAAZE00000002	exon	104673234	104673393	-
GWHAAZE00000002	exon	104672850	104673125	-
GWHAAZE00000002	exon	104671161	104671613	-
GWHAAZE00000002	CDS	104676701	104676911	-
GWHAAZE00000002	CDS	104675753	104676086	-
GWHAAZE00000002	CDS	104673234	104673393	-
GWHAAZE00000002	CDS	104672850	104673125	-
GWHAAZE00000002	CDS	104671431	104671613	-
GWHAAZE00000002	three_prime_UTR	104671161	104671430	-

Transcript Sequence
>GWHTAAZE009196 ATGGCCGCAATTTTGTCACACCCTTCTTCTGTTAGATCGTCCGATGCCTCAGCTCTCTCCTCTTCTTCCCTCTTTGGCCGAAATTTCCGGCAAGGTTTGCATTTCTCCAGCATTTCTCAGCCTTCTCGGACCAGTATTCCTGCTTCTGGACGGCGAATTTCTTGTCAGACCTCAGCGACTTCTTCGCCATCAGCTTCTGTTAATGGAAAAGCAAAAGCAGGACTCAAGGATTTTTTACACATTGATGATTTTGACAAAGCAACGATATTAAAGATTTTGGATAGAGCCAAGGACGTAAAGGCATTGCTTAAATCAGGTGAGAGGACATTCCTACCGTTTAAGGGGAAGACAATGGCAATGATATTCGCAAAGCCATCAATGAGGACACGGGTTTCATTTGAGACTGGATTTTTCTTGCTCGGTGGCCACGCTTCCTATATTTGGGACCAGATGATATCCAAATGGGGAAGCGTGAAGAAACCCGTGATGTGGCTCCTCTTTCTCGCTATAATGATGTCATTATGGCTCGTCTTTTTGCTCATCAGTTACGTACATTATTTGATTCTGTTGCAGGACCTTCTGGATCTCGCTAAATATGCAACTGTACCTGTAATCAATGGCCTGACCGACTATAACCATCCTTGTCAGATCATGGCAGATGCACTGACAATAATTGAGCACATTGGTCAATTGGAAGGAACCAAGGTTGTCTATGTTGGAGATGGAAACAACATTGTGCATTCTTGGCTTTTGTTGGCATCAGTTATTCCTTTTCATTTTATCTGTGCTTGCCCTAAAGGTTTTGAACCTGACGAGAAGACAGTTAAAAAGGCACAACAAGCTGGAGTCGGCAAAATTGAGATAACTAATGATCCAAAGGAAGCTGTTAAAGGAGCCGATGTAGTGTATTCGGATGTGTGGGCCAGCATGGGTCAGAAGGAAGAAGCTGCGTATCGCCGCCAAGTGTTTTGTGGATTCCAGGTGGATGAAGAACTTATGAAGATAGCAGGACGAAACGCGTATTTTATGCATTGCTTACCGGCAGAAAGAGGGGTGGAGGTTACGGATGGTGTTATCGAAGCTCCAAACTCTATTGTCTTCCCTCAAGCTGAGAACCGAATGCATGCTCAGAATGCAATAATGCTTCACTCGCTTGGTTTATGAATGCGCTCTCTACTCTCCTTTTACAGTCATAAGCATGTTCCCCTTTTATTCCTAGCTTTTTTGTTTGTTTTGCAGTCAACTTTTCGGTCTTTTGCGGTTGTAGAACATTATGATTCAAGTATCTGCACTCTCTACATGTCTATTATGAGTTTTCCCCTCCCTCAATTGAGCTTTTGAATGTTTTCTAGTCCTTTGATGGTGTTACAGCCTGCCCTCTTGAAACGTACTTGTGAATTGGAACTTTGGAAGTAATGTCTTACATTTTCTTCA

Network for GWHGAAZE009186

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0289

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02729.22	OTCace_N	76	226	9.60E-30
PF00185.25	OTCace	232	382	5.30E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00611	OTC, argF, argI	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Arginine biosynthesis	map00220

Gene Ontology

GO term	Ontology	Name
GO:0006520	biological_process	cellular amino acid metabolic process
GO:0016597	molecular_function	amino acid binding
GO:0016743	molecular_function	carboxyl- or carbamoyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.347
	SRR3591706	second leaf	23.187
	SRR3591707	mature leaf	25.076
	SRR3591708	Shoot apex	46.787
	SRR3591709	Stem	28.374
	SRR3591710	White floral bud	15.594
	SRR3591711	White flower	18.982
	SRR3591712	Green floral bud	38.029
	SRR3591713	Yellow flower	14.966
SRP173429	SRR8316895	Juvenile bud stage	17.290
	SRR8316896	Juvenile bud stage	25.318
	SRR8316897	Juvenile bud stage	5.912
	SRR8316894	Third green stage	8.601
	SRR8316900	Third green stage	31.434
	SRR8316901	Third green stage	25.201
	SRR8316898	Complete white stage	5.361
	SRR8316899	Complete white stage	27.258
	SRR8316903	Complete white stage	8.437
	SRR8316902	Silver flowering stage	2.722
	SRR8316904	Silver flowering stage	2.248
	SRR8316905	Silver flowering stage	1.340
	SRR8316906	Gold flowering stage	3.827
	SRR8316907	Gold flowering stage	7.050
	SRR8316908	Gold flowering stage	2.950
SRP132670	SRR6706286	Control	17.950
	SRR6706287	Light intensity 50%	18.063
	SRR6706288	Light intensity 20%	19.991
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.235
	CNS0095593	Slightly white alabastrum(diploid) 2	27.454
	CNS0095594	Slightly white alabastrum(diploid) 3	28.520
	CNS0095595	Whole white alabastrum(diploid) 2	22.701
	CNS0095596	Whole white alabastrum(diploid) 3	23.990
	CNS0095597	Whole white alabastrum(diploid) 4	15.167
	CNS0095598	Silvery flower (diploied) 1	21.890
	CNS0095599	Silvery flower (diploied) 2	21.471
	CNS0095600	Silvery flower (diploied) 3	16.422
	CNS0095601	Golden flower (diploid) 1	18.091
	CNS0095602	Golden flower (diploid) 2	19.324
	CNS0095603	Golden flower (diploid) 3	16.262
	CNS0095604	Slightly white alabastrum(tetraploid) 1	50.167
	CNS0095605	Slightly white alabastrum(tetraploid) 2	46.061
	CNS0095606	Slightly white alabastrum(tetraploid) 3	68.075
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.616
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.003
	CNS0095609	Whole white alabastrum(tetraploid) 3	57.751
	CNS0095610	Silvery flower (tetraploid) 1	31.616
	CNS0095611	Silvery flower (tetraploid) 2	37.638
	CNS0095612	Silvery flower (tetraploid) 3	22.804
	CNS0095613	Golden flower (tetraploid) 1	16.638
	CNS0095614	Golden flower (tetraploid) 2	27.366
	CNS0095615	Golden flower (tetraploid) 3	5.481
CRA001975	CRR073297	Stem 1	26.173
	CRR073298	Stem 2	23.785
	CRR073299	Stem 3	34.504
	CRR073300	Leaf 1	26.295
	CRR073301	Leaf 2	25.823
	CRR073302	Leaf 3	26.641
	CRR073303	Juvenile bud 1	30.378
	CRR073304	Juvenile bud 2	24.766
	CRR073305	Juvenile bud 3	32.580
	CRR073306	Third green 1	2.487
	CRR073307	Third green 2	2.120
	CRR073308	Third green 3	2.147
	CRR073309	Second white 1	4.776
	CRR073310	Second white 2	3.073
	CRR073311	Second white 3	1.893
	CRR073312	Silver flowering 1	1.173
	CRR073313	Silver flowering 2	3.041
	CRR073314	Silver flowering 3	2.288
	CRR073315	Gold flowering 1	18.288
	CRR073316	Gold flowering 2	21.309
	CRR073317	Gold flowering 3	19.144
	CRR073318	Tawny withering 1	20.754
	CRR073319	Tawny withering 2	17.507
	CRR073320	Tawny withering 3	22.400