Gene detail

Detail information of GWHGAAZE009194

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009794082.1	0	PREDICTED: 3-ketoacyl-CoA synthase 12-like [Nicotiana sylvestris]
Swissprot	tr\|Q9SIB2\|KCS12_ARATH	0	3-ketoacyl-CoA synthase 12 (Precursor)
trEMBL	tr\|A0A068UMY2\|A0A068UMY2_COFCA	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}
TAIR10	AT2G28630.1	7E-176	3-ketoacyl-CoA synthase 12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	104913220	104914473	-
GWHAAZE00000002	mRNA	104913220	104914473	-
GWHAAZE00000002	exon	104913220	104914473	-
GWHAAZE00000002	CDS	104913220	104914473	-

Transcript Sequence
>GWHTAAZE009204 ATGCTTAGCACCGAATTCTCCGGCAATGTCATCAAAAGAAACAAGAATCTTGGCCTCAATGAGTACAAGTTCCTCTTGAAAGCCATAGTAAGCTCAGGCATTGGCGAAGAAACCTATGGCCCAAGAATGGTCTTCAAAAACCAAGAAGAAAACCCCACACTCGAATCATCAATCAGCGAGATGGACGAGTTCTTCTTCGACACTATCACTAAGCTCTTGTCAAGATCACGCATCTCCCCTACGGAGATCGATGTGTTAATAGTGAATGTGTCGATGCTCACTACAGTTCCCTCTTTATCATCCAGAATAATCAATTATTTCAAAATGAGGGATGATGTTAAGACCTACAATCTCACCGGGATGGGGTGTAGTGCGAGCTTGATCTCAATCAATATCGCACAAAATATATTCAAGACACGCAAAAACTTGTACGCGCTTGTGGTGTGCTCTGAATCCTTGACCCCTAACTGGTACTCAGGCAACGATAAGTCAATGATACTGTCGAATTGTCTGTTTAGGATAGGAGGGTGCGCGATGCTCTTAACCAACAAGCCTGCCCTAAGGCACAAGGCCATGTTCAAGTTGAAGTGCTTGGTGCGAACCCACCACGGAGCAAAAGATGAAGCTTATGGTTGTTGTGTACAAAGGGAGGATGATCGTGGCTTGGTAGGGTTTCATCTGGATAAAACCCTGCCAAAGGCTGCGACCAGGGCTTTCATAGATAATCTTAAAGAAATATCCCCCAAGATTTTGCCACTACGCGAGCTATTAAGGTACACTATAATCTCATTTATTCGAAAATGGAGCGGTCAAAGCTCGATAAAGGGATCGGCAAAGCCGGTAATTAACTTCAAGATGGGAGTCGATCATTTTTGCCTTCACACGGGAGGGAAGGCGGTGATCGATGCGATCGGGAAGAGCCTTGGACTTAGTGAATTTGATGTGGAGCCAGCAAGAATGACATTGCATAGGTTCGGTAACACATCAGCTAGTAGCCTTTGGTATGTGTTAGGGTACATGGAGGCCAAAAAGAGGCTTAAGAAAGGGGATAGGGTTTTTATGATAAGCTTTGGGGCTGGGTTTAAGTGTAATAGTTGTTTGTGGGAAGTTACAAGGAACTTGGAAGGAGAAGGAAATGTGTGGAAAGAGTGCAATATTGATACCTACCCACCAAAAACCCTAGCTAACCCCTTCTTGGAGAAATATGGTTGGATCCAAAGTGAAGATATAAGCACCTTCAAACTTCCAGAGTAA

Network for GWHGAAZE009194

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08392.13	FAE1_CUT1_RppA	2	266	1.80E-105
PF08541.11	ACP_syn_III_C	288	369	1.40E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15397	KCS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.193
	SRR3591706	second leaf	35.173
	SRR3591707	mature leaf	10.875
	SRR3591708	Shoot apex	21.424
	SRR3591709	Stem	4.038
	SRR3591710	White floral bud	8.244
	SRR3591711	White flower	3.488
	SRR3591712	Green floral bud	19.362
	SRR3591713	Yellow flower	3.168
SRP173429	SRR8316895	Juvenile bud stage	7.192
	SRR8316896	Juvenile bud stage	13.144
	SRR8316897	Juvenile bud stage	4.147
	SRR8316894	Third green stage	8.574
	SRR8316900	Third green stage	27.138
	SRR8316901	Third green stage	25.590
	SRR8316898	Complete white stage	8.231
	SRR8316899	Complete white stage	35.616
	SRR8316903	Complete white stage	13.126
	SRR8316902	Silver flowering stage	2.405
	SRR8316904	Silver flowering stage	3.350
	SRR8316905	Silver flowering stage	0.699
	SRR8316906	Gold flowering stage	1.009
	SRR8316907	Gold flowering stage	1.543
	SRR8316908	Gold flowering stage	1.922
SRP132670	SRR6706286	Control	31.379
	SRR6706287	Light intensity 50%	34.157
	SRR6706288	Light intensity 20%	38.429
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.359
	CNS0095593	Slightly white alabastrum(diploid) 2	4.620
	CNS0095594	Slightly white alabastrum(diploid) 3	4.111
	CNS0095595	Whole white alabastrum(diploid) 2	5.913
	CNS0095596	Whole white alabastrum(diploid) 3	5.138
	CNS0095597	Whole white alabastrum(diploid) 4	5.223
	CNS0095598	Silvery flower (diploied) 1	4.976
	CNS0095599	Silvery flower (diploied) 2	2.729
	CNS0095600	Silvery flower (diploied) 3	3.952
	CNS0095601	Golden flower (diploid) 1	2.218
	CNS0095602	Golden flower (diploid) 2	3.676
	CNS0095603	Golden flower (diploid) 3	2.869
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.485
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.410
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.510
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.343
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.533
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.090
	CNS0095610	Silvery flower (tetraploid) 1	2.219
	CNS0095611	Silvery flower (tetraploid) 2	2.804
	CNS0095612	Silvery flower (tetraploid) 3	0.498
	CNS0095613	Golden flower (tetraploid) 1	2.687
	CNS0095614	Golden flower (tetraploid) 2	2.958
	CNS0095615	Golden flower (tetraploid) 3	1.861
CRA001975	CRR073297	Stem 1	15.902
	CRR073298	Stem 2	14.435
	CRR073299	Stem 3	11.972
	CRR073300	Leaf 1	23.824
	CRR073301	Leaf 2	22.219
	CRR073302	Leaf 3	26.079
	CRR073303	Juvenile bud 1	28.820
	CRR073304	Juvenile bud 2	25.547
	CRR073305	Juvenile bud 3	37.037
	CRR073306	Third green 1	1.386
	CRR073307	Third green 2	1.725
	CRR073308	Third green 3	2.431
	CRR073309	Second white 1	0.053
	CRR073310	Second white 2	0.270
	CRR073311	Second white 3	0.688
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.970
	CRR073314	Silver flowering 3	0.078
	CRR073315	Gold flowering 1	5.347
	CRR073316	Gold flowering 2	6.253
	CRR073317	Gold flowering 3	10.389
	CRR073318	Tawny withering 1	2.284
	CRR073319	Tawny withering 2	0.375
	CRR073320	Tawny withering 3	0.803