Gene detail

Detail information of GWHGAAZE009212

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002533110.1	1.15964E-40	nucleic acid binding protein, putative [Ricinus communis]
Swissprot	tr\|Q9SLD4\|ZAT11_ARATH	7E-29	Zinc finger protein ZAT11
trEMBL	tr\|B9T4E1\|B9T4E1_RICCO	4E-41	Nucleic acid binding protein, putative {ECO:0000313\|EMBL:EEF29282.1}
TAIR10	AT2G37430.1	5E-25	C2H2 and C2HC zinc fingers superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	105586703	105594150	+
GWHAAZE00000002	mRNA	105586703	105594150	+
GWHAAZE00000002	exon	105586703	105587381	+
GWHAAZE00000002	exon	105593723	105594150	+
GWHAAZE00000002	CDS	105586703	105587381	+
GWHAAZE00000002	CDS	105593723	105594150	+

Transcript Sequence
>GWHTAAZE009222 ATGGCCGTAAAGAGGACTAGAGAATTAGACGGAGGCTGGAGTAAAGAGTATGAAGGTGTTGAATCACTAGCCATGAATGATTGCAATAGGTTATTATCGCGTATCGATAAGCCAGCGCAACGTACTTTTAAGTGTAAGACATGTGACCGTTGGTTTGATTCGTTTCAAGCATTAGGTGGCCACACCGCCAGTCACAGTACCAAAGCCGGTGACTCGCCCAAGAATCAAAAGATTCACCGGTGTTCCAAATGTGGAGCTGTGTTTTCGTCCGGTCAAGCCTTGGGGGGTCACATGAGACGACACCTAAACACGAGCCCCAGTCCTGATAGTGAAGAGGCAGAGTTGACGGCTAGGGAGATGAATAGTAGTAGCAATAGATTGCCGCAAAAGATAATCGGTACTTCTCGAGTATCACGTGATTGTAGTCCAACGCGGGGTGGGATTGACTTCTCCTCGGGTCAAGCCCTAGGGGATCACATGGGGCCACACCCAAACACGAGCCCCAATTCCACAGAAAGCAATGGCAACATTCCTCTAGTACCATGTGGTTATAATCCAGTGCGGAGTTTTGATCTAAATTTATCACCTATGGAGGAAGAAATTAATTTTCCAGACGAAAATTATCATCCCGATGAAGAGAATTATTCGAAGTTAAAGATCGAGTCTTTGGAAGAAAGAGGCGGCCGAATCTTCGAGTGCAAGACGTGTAACAAGCAATTCTCATCATTCCAAGCTCTCGGTGGCCACCGGGCTAGCCACAAGCGGCCTAAGCTAACCGCCGGTGACCTATTGACGAATCAACTTCATGACTCGCCTCCTAAGGCGAAAACACACGAGTGCTCAATTTGCGGGCTCGAGTTTGCCATAGGCCAAGCATTAGGTGGTCACATGAGACGCCACCGTGCCGCCCCTAGTGAAAGGGCGGTGAAGGGTGAGTTGAAGGCAGCGGAGGCTGTGGTTCCAGTCTTGAGGAGGTCAAGTAGTAAGAGAGTTATGGGATTGGATTTGAATTTGAGCTTGAGCTTGATGCCTTATGAAGAGAGTGGTTTGGAGTTGGATTTGAAGTTGGGACATGAGATAGGTCCAATGCTGAAGTCTTTCATTTGA

Network for GWHGAAZE009212

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13912.7	zf-C2H2_6	43	66	6.40E-08
PF13912.7	zf-C2H2_6	79	101	6.60E-11
PF13912.7	zf-C2H2_6	231	255	2.90E-12
PF13912.7	zf-C2H2_6	278	302	2.40E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.995
	SRR3591706	second leaf	3.853
	SRR3591707	mature leaf	0.880
	SRR3591708	Shoot apex	7.472
	SRR3591709	Stem	32.423
	SRR3591710	White floral bud	9.627
	SRR3591711	White flower	17.497
	SRR3591712	Green floral bud	7.841
	SRR3591713	Yellow flower	32.713
SRP173429	SRR8316895	Juvenile bud stage	17.216
	SRR8316896	Juvenile bud stage	3.493
	SRR8316897	Juvenile bud stage	11.191
	SRR8316894	Third green stage	5.526
	SRR8316900	Third green stage	4.580
	SRR8316901	Third green stage	10.108
	SRR8316898	Complete white stage	0.055
	SRR8316899	Complete white stage	13.064
	SRR8316903	Complete white stage	0.086
	SRR8316902	Silver flowering stage	1.068
	SRR8316904	Silver flowering stage	0.915
	SRR8316905	Silver flowering stage	0.776
	SRR8316906	Gold flowering stage	9.840
	SRR8316907	Gold flowering stage	4.498
	SRR8316908	Gold flowering stage	11.859
SRP132670	SRR6706286	Control	0.905
	SRR6706287	Light intensity 50%	1.703
	SRR6706288	Light intensity 20%	0.971
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.428
	CNS0095593	Slightly white alabastrum(diploid) 2	17.046
	CNS0095594	Slightly white alabastrum(diploid) 3	13.420
	CNS0095595	Whole white alabastrum(diploid) 2	8.705
	CNS0095596	Whole white alabastrum(diploid) 3	1.223
	CNS0095597	Whole white alabastrum(diploid) 4	7.052
	CNS0095598	Silvery flower (diploied) 1	29.519
	CNS0095599	Silvery flower (diploied) 2	30.952
	CNS0095600	Silvery flower (diploied) 3	9.339
	CNS0095601	Golden flower (diploid) 1	26.017
	CNS0095602	Golden flower (diploid) 2	12.591
	CNS0095603	Golden flower (diploid) 3	13.042
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.162
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.357
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.050
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.078
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.047
	CNS0095610	Silvery flower (tetraploid) 1	0.283
	CNS0095611	Silvery flower (tetraploid) 2	0.501
	CNS0095612	Silvery flower (tetraploid) 3	3.130
	CNS0095613	Golden flower (tetraploid) 1	2.163
	CNS0095614	Golden flower (tetraploid) 2	0.838
	CNS0095615	Golden flower (tetraploid) 3	2.050
CRA001975	CRR073297	Stem 1	4.449
	CRR073298	Stem 2	6.180
	CRR073299	Stem 3	4.473
	CRR073300	Leaf 1	15.018
	CRR073301	Leaf 2	24.616
	CRR073302	Leaf 3	12.956
	CRR073303	Juvenile bud 1	11.827
	CRR073304	Juvenile bud 2	13.661
	CRR073305	Juvenile bud 3	15.879
	CRR073306	Third green 1	1.237
	CRR073307	Third green 2	1.661
	CRR073308	Third green 3	1.060
	CRR073309	Second white 1	3.025
	CRR073310	Second white 2	4.101
	CRR073311	Second white 3	3.036
	CRR073312	Silver flowering 1	24.365
	CRR073313	Silver flowering 2	15.794
	CRR073314	Silver flowering 3	11.643
	CRR073315	Gold flowering 1	3.709
	CRR073316	Gold flowering 2	7.220
	CRR073317	Gold flowering 3	9.639
	CRR073318	Tawny withering 1	3.908
	CRR073319	Tawny withering 2	23.808
	CRR073320	Tawny withering 3	3.650