Detail information of GWHGAAZE009216


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009598240.14.6265E-153PREDICTED: ras-related protein RABE1c-like [Nicotiana tomentosiformis]
Swissprottr|P28186|RAE1C_ARATH3E-140Ras-related protein RABE1c
trEMBLtr|I1Y996|I1Y996_NICBE4E-153RabE1 {ECO:0000313|EMBL:AFI98561.1}
TAIR10AT5G59840.12E-95Ras-related small GTP-binding family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene105629331105634744-
GWHAAZE00000002mRNA105629331105634744-
GWHAAZE00000002exon105634365105634744-
GWHAAZE00000002exon105634051105634179-
GWHAAZE00000002exon105632829105632901-
GWHAAZE00000002exon105632632105632732-
GWHAAZE00000002exon105631920105631985-
GWHAAZE00000002exon105630894105630991-
GWHAAZE00000002exon105630701105630763-
GWHAAZE00000002exon105630523105630615-
GWHAAZE00000002exon105629393105629683-
GWHAAZE00000002exon105629331105629369-
GWHAAZE00000002five_prime_UTR105634365105634744-
GWHAAZE00000002five_prime_UTR105634124105634179-
GWHAAZE00000002CDS105634051105634123-
GWHAAZE00000002CDS105632829105632901-
GWHAAZE00000002CDS105632632105632732-
GWHAAZE00000002CDS105631920105631985-
GWHAAZE00000002CDS105630894105630991-
GWHAAZE00000002CDS105630701105630763-
GWHAAZE00000002CDS105630523105630615-
GWHAAZE00000002CDS105629600105629683-
GWHAAZE00000002three_prime_UTR105629393105629599-
GWHAAZE00000002three_prime_UTR105629331105629369-
Transcript Sequence

Network for GWHGAAZE009216

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras171781.90E-66
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07901RAB8A, MEL AMPK signaling pathway map04152
Endocytosismap04144
Autophagy - animalmap04140
Tight junctionmap04530
Pancreatic secretionmap04972

Gene Ontology

GO term OntologyName
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf172.140
SRR3591706second leaf87.753
SRR3591707mature leaf65.073
SRR3591708Shoot apex130.236
SRR3591709Stem157.899
SRR3591710White floral bud94.729
SRR3591711White flower66.980
SRR3591712Green floral bud161.620
SRR3591713Yellow flower61.584
SRP173429 SRR8316895Juvenile bud stage 63.237
SRR8316896Juvenile bud stage 101.279
SRR8316897Juvenile bud stage 49.084
SRR8316894Third green stage 42.106
SRR8316900Third green stage 121.894
SRR8316901Third green stage 130.116
SRR8316898Complete white stage 39.266
SRR8316899Complete white stage 147.004
SRR8316903Complete white stage 54.984
SRR8316902Silver flowering stage22.355
SRR8316904Silver flowering stage28.076
SRR8316905Silver flowering stage16.121
SRR8316906Gold flowering stage 46.796
SRR8316907Gold flowering stage 50.436
SRR8316908Gold flowering stage 44.339
SRP132670SRR6706286Control96.132
SRR6706287Light intensity 50%103.368
SRR6706288Light intensity 20%110.975
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1128.710
CNS0095593Slightly white alabastrum(diploid) 2116.820
CNS0095594Slightly white alabastrum(diploid) 3121.026
CNS0095595Whole white alabastrum(diploid) 2131.242
CNS0095596Whole white alabastrum(diploid) 3133.569
CNS0095597Whole white alabastrum(diploid) 4132.510
CNS0095598Silvery flower (diploied) 152.981
CNS0095599Silvery flower (diploied) 250.285
CNS0095600Silvery flower (diploied) 352.843
CNS0095601Golden flower (diploid) 158.441
CNS0095602Golden flower (diploid) 262.314
CNS0095603Golden flower (diploid) 362.002
CNS0095604Slightly white alabastrum(tetraploid) 1154.555
CNS0095605Slightly white alabastrum(tetraploid) 2142.481
CNS0095606Slightly white alabastrum(tetraploid) 3149.666
CNS0095607Whole white alabastrum(tetraploid) 1149.172
CNS0095608Whole white alabastrum(tetraploid) 2144.455
CNS0095609Whole white alabastrum(tetraploid) 3129.968
CNS0095610Silvery flower (tetraploid) 141.051
CNS0095611Silvery flower (tetraploid) 236.674
CNS0095612Silvery flower (tetraploid) 325.100
CNS0095613Golden flower (tetraploid) 140.710
CNS0095614Golden flower (tetraploid) 243.781
CNS0095615Golden flower (tetraploid) 337.389
CRA001975CRR073297Stem 1107.005
CRR073298Stem 2105.702
CRR073299Stem 396.749
CRR073300Leaf 1146.770
CRR073301Leaf 2147.233
CRR073302Leaf 3133.526
CRR073303Juvenile bud 1128.629
CRR073304Juvenile bud 288.693
CRR073305Juvenile bud 3122.081
CRR073306Third green 143.631
CRR073307Third green 257.196
CRR073308Third green 357.040
CRR073309Second white 119.673
CRR073310Second white 218.941
CRR073311Second white 310.569
CRR073312Silver flowering 118.512
CRR073313Silver flowering 225.950
CRR073314Silver flowering 323.029
CRR073315Gold flowering 152.831
CRR073316Gold flowering 259.261
CRR073317Gold flowering 350.822
CRR073318Tawny withering 1128.061
CRR073319Tawny withering 2119.581
CRR073320Tawny withering 3136.295