Detail information of GWHGAAZE009218


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010047429.13.85059E-96PREDICTED: histone H2A [Eucalyptus grandis]
Swissprottr|Q9M531|H2A_EUPES8E-82Histone H2A
trEMBLtr|A0A059DFA5|A0A059DFA5_EUCGR1E-96Histone H2A {ECO:0000256|RuleBase:RU003556}
TAIR10AT5G02560.15E-43histone H2A 12

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene105693165105694093-
GWHAAZE00000002mRNA105693165105694093-
GWHAAZE00000002exon105693876105694093-
GWHAAZE00000002exon105693165105693671-
GWHAAZE00000002five_prime_UTR105694086105694093-
GWHAAZE00000002CDS105693876105694085-
GWHAAZE00000002CDS105693426105693671-
GWHAAZE00000002three_prime_UTR105693165105693425-
Transcript Sequence

Network for GWHGAAZE009218

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00125.25Histone20975.50E-13
PF16211.6Histone_H2A_C1001341.80E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11251H2A Necroptosis map04217

Gene Ontology

GO term OntologyName
GO:0000786cellular_componentnucleosome
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0046982molecular_functionprotein heterodimerization activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE009218.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30100200300400500600700800Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf187.283
SRR3591706second leaf53.947
SRR3591707mature leaf12.213
SRR3591708Shoot apex742.852
SRR3591709Stem78.022
SRR3591710White floral bud20.883
SRR3591711White flower8.538
SRR3591712Green floral bud19.662
SRR3591713Yellow flower1.004
SRP173429 SRR8316895Juvenile bud stage 51.106
SRR8316896Juvenile bud stage 50.912
SRR8316897Juvenile bud stage 16.083
SRR8316894Third green stage 11.725
SRR8316900Third green stage 13.238
SRR8316901Third green stage 12.008
SRR8316898Complete white stage 5.356
SRR8316899Complete white stage 15.027
SRR8316903Complete white stage 10.299
SRR8316902Silver flowering stage7.040
SRR8316904Silver flowering stage7.016
SRR8316905Silver flowering stage5.013
SRR8316906Gold flowering stage 17.017
SRR8316907Gold flowering stage 21.404
SRR8316908Gold flowering stage 16.520
SRP132670SRR6706286Control21.481
SRR6706287Light intensity 50%22.921
SRR6706288Light intensity 20%30.236
CNP0000432CNS0095592Slightly white alabastrum(diploid) 161.586
CNS0095593Slightly white alabastrum(diploid) 254.163
CNS0095594Slightly white alabastrum(diploid) 339.531
CNS0095595Whole white alabastrum(diploid) 217.205
CNS0095596Whole white alabastrum(diploid) 37.780
CNS0095597Whole white alabastrum(diploid) 410.549
CNS0095598Silvery flower (diploied) 118.246
CNS0095599Silvery flower (diploied) 224.943
CNS0095600Silvery flower (diploied) 312.631
CNS0095601Golden flower (diploid) 112.791
CNS0095602Golden flower (diploid) 28.377
CNS0095603Golden flower (diploid) 311.144
CNS0095604Slightly white alabastrum(tetraploid) 160.361
CNS0095605Slightly white alabastrum(tetraploid) 250.005
CNS0095606Slightly white alabastrum(tetraploid) 393.933
CNS0095607Whole white alabastrum(tetraploid) 118.347
CNS0095608Whole white alabastrum(tetraploid) 26.604
CNS0095609Whole white alabastrum(tetraploid) 312.074
CNS0095610Silvery flower (tetraploid) 14.102
CNS0095611Silvery flower (tetraploid) 28.924
CNS0095612Silvery flower (tetraploid) 313.876
CNS0095613Golden flower (tetraploid) 16.176
CNS0095614Golden flower (tetraploid) 24.321
CNS0095615Golden flower (tetraploid) 310.307
CRA001975CRR073297Stem 171.857
CRR073298Stem 263.647
CRR073299Stem 3124.683
CRR073300Leaf 110.857
CRR073301Leaf 28.922
CRR073302Leaf 314.454
CRR073303Juvenile bud 17.058
CRR073304Juvenile bud 24.464
CRR073305Juvenile bud 310.439
CRR073306Third green 115.480
CRR073307Third green 214.352
CRR073308Third green 313.333
CRR073309Second white 119.335
CRR073310Second white 212.666
CRR073311Second white 314.176
CRR073312Silver flowering 112.573
CRR073313Silver flowering 29.136
CRR073314Silver flowering 38.051
CRR073315Gold flowering 19.379
CRR073316Gold flowering 211.608
CRR073317Gold flowering 310.136
CRR073318Tawny withering 1114.118
CRR073319Tawny withering 2100.418
CRR073320Tawny withering 3137.123