Gene detail

Detail information of GWHGAAZE009232

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281144.1	7.77653E-75	PREDICTED: dof zinc finger protein DOF3.6 [Vitis vinifera]
Swissprot	tr\|Q9M2U1\|DOF36_ARATH	6E-51	Dof zinc finger protein DOF3.6
trEMBL	tr\|F6GV23\|F6GV23_VITVI	3E-75	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43582.1}
TAIR10	AT3G55370.2	1E-33	OBF-binding protein 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	106004479	106005243	+
GWHAAZE00000002	mRNA	106004479	106005243	+
GWHAAZE00000002	exon	106004479	106005243	+
GWHAAZE00000002	CDS	106004479	106005243	+

Transcript Sequence
>GWHTAAZE009242 ATGGTTGACCGAGCTAGGCTAGCCAAGCTACCACTACCAGAAGCAGGACTAAATTGCCCTCGCTGCGATTCCACCAATACGAAGTTTTGCTACTTCAACAACTACAGCCTGACACAGCCTCGTCACTTCTGCAAGACCTGTCGCCGTTACTGGACCCGAGGTGGGGCCCTCAGGAGTGTCCCCGTGGGTGGTGGTTGCCGGAGAAACAAGAGGAGCAAAAGCCGAAGCTCGAAATCTCCAATCAAAATCTCAAACCCTAATAGCTCCTCTGTAAGTGCTAGCCCATCCAGCTCAGAAATGGCAGGTGGTGGTGGTCAGTTCCCACAATTACCCCTCATGTCTGCTCTACAAAACCTTCCTCAATATGGTGGTGGTATTAATGGTACTGGTAATATTAGCTCGAATATAGGGGCATTTCAGTCACAAATGGTGGCGGCCGGTGGTAATAGCCAAAATATTGATGGTATGGGTTTCCAAATTGGGAATAATTCAGGTGGAGGAGCTGGAGCTGGAGCCAGTGTGTGGCGGCTGCCTTTCTTGGCTGGCTTTGAGCCGCAAGCGAATTTGTTCAATTACCAAAGTGAAGGAACAAGCGTGGGGGCTCCAGTGAAGGAGGAAGAGAGCCGTGGCTTAAACTTATCGAGGCAATTTTTGGGTATTTCTGAAAATAATAATCAATATTGGGTTGGAAATGGAAATGGAAATAATTCATGGGCCGAATTTTCGGGTCTCAACTCTACTTCTTCTACTACCCATTTCCTCTAA

Network for GWHGAAZE009232

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02701.16	zf-Dof	17	71	1.30E-31

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	50.256
	SRR3591706	second leaf	25.951
	SRR3591707	mature leaf	13.734
	SRR3591708	Shoot apex	34.752
	SRR3591709	Stem	39.223
	SRR3591710	White floral bud	22.684
	SRR3591711	White flower	19.272
	SRR3591712	Green floral bud	21.272
	SRR3591713	Yellow flower	3.582
SRP173429	SRR8316895	Juvenile bud stage	9.006
	SRR8316896	Juvenile bud stage	7.871
	SRR8316897	Juvenile bud stage	3.074
	SRR8316894	Third green stage	4.162
	SRR8316900	Third green stage	15.751
	SRR8316901	Third green stage	15.392
	SRR8316898	Complete white stage	4.576
	SRR8316899	Complete white stage	18.708
	SRR8316903	Complete white stage	8.923
	SRR8316902	Silver flowering stage	4.821
	SRR8316904	Silver flowering stage	4.424
	SRR8316905	Silver flowering stage	2.304
	SRR8316906	Gold flowering stage	5.029
	SRR8316907	Gold flowering stage	4.266
	SRR8316908	Gold flowering stage	4.532
SRP132670	SRR6706286	Control	8.232
	SRR6706287	Light intensity 50%	7.654
	SRR6706288	Light intensity 20%	8.296
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.232
	CNS0095593	Slightly white alabastrum(diploid) 2	17.852
	CNS0095594	Slightly white alabastrum(diploid) 3	14.499
	CNS0095595	Whole white alabastrum(diploid) 2	17.113
	CNS0095596	Whole white alabastrum(diploid) 3	11.636
	CNS0095597	Whole white alabastrum(diploid) 4	15.026
	CNS0095598	Silvery flower (diploied) 1	6.413
	CNS0095599	Silvery flower (diploied) 2	8.115
	CNS0095600	Silvery flower (diploied) 3	5.217
	CNS0095601	Golden flower (diploid) 1	4.795
	CNS0095602	Golden flower (diploid) 2	5.125
	CNS0095603	Golden flower (diploid) 3	4.137
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.802
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.660
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.320
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.723
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.758
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.796
	CNS0095610	Silvery flower (tetraploid) 1	8.988
	CNS0095611	Silvery flower (tetraploid) 2	6.583
	CNS0095612	Silvery flower (tetraploid) 3	9.133
	CNS0095613	Golden flower (tetraploid) 1	6.076
	CNS0095614	Golden flower (tetraploid) 2	7.328
	CNS0095615	Golden flower (tetraploid) 3	5.367
CRA001975	CRR073297	Stem 1	9.380
	CRR073298	Stem 2	9.563
	CRR073299	Stem 3	17.997
	CRR073300	Leaf 1	14.161
	CRR073301	Leaf 2	12.764
	CRR073302	Leaf 3	8.904
	CRR073303	Juvenile bud 1	11.068
	CRR073304	Juvenile bud 2	7.098
	CRR073305	Juvenile bud 3	11.993
	CRR073306	Third green 1	7.719
	CRR073307	Third green 2	14.421
	CRR073308	Third green 3	10.763
	CRR073309	Second white 1	4.083
	CRR073310	Second white 2	4.738
	CRR073311	Second white 3	2.075
	CRR073312	Silver flowering 1	0.858
	CRR073313	Silver flowering 2	3.097
	CRR073314	Silver flowering 3	1.210
	CRR073315	Gold flowering 1	7.364
	CRR073316	Gold flowering 2	4.663
	CRR073317	Gold flowering 3	6.848
	CRR073318	Tawny withering 1	24.478
	CRR073319	Tawny withering 2	18.614
	CRR073320	Tawny withering 3	27.252