Detail information of GWHGAAZE009235


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP32434.10hypothetical protein JCGZ_13359 [Jatropha curcas]
Swissprottr|Q9LD90|CBF5_ARATH0H/ACA ribonucleoprotein complex subunit 4
trEMBLtr|A0A067KKT9|A0A067KKT9_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP32434.1}
TAIR10AT3G57150.16E-180homologue of NAP57

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene106084670106086955-
GWHAAZE00000002mRNA106084670106086955-
GWHAAZE00000002exon106084670106085739-
GWHAAZE00000002exon106085855106086195-
GWHAAZE00000002exon106086316106086368-
GWHAAZE00000002exon106086674106086955-
GWHAAZE00000002CDS106086674106086955-
GWHAAZE00000002CDS106086316106086368-
GWHAAZE00000002CDS106085855106086195-
GWHAAZE00000002CDS106084670106085739-
Transcript Sequence

Network for GWHGAAZE009235

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08068.13DKCLD56926.20E-10
PF08068.13DKCLD1111301.20E-08
PF01509.19TruB_N1342217.50E-18
PF16198.6TruB_C_22272782.80E-13
PF01472.21PUA2823541.80E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11131DKC1, NOLA4, CBF5 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0001522biological_processpseudouridine synthesis
GO:0009451biological_processRNA modification
GO:0006396biological_processRNA processing
GO:0003723molecular_functionRNA binding
GO:0009982molecular_functionpseudouridine synthase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf29.202
SRR3591706second leaf9.690
SRR3591707mature leaf7.164
SRR3591708Shoot apex52.338
SRR3591709Stem12.352
SRR3591710White floral bud12.404
SRR3591711White flower28.132
SRR3591712Green floral bud39.384
SRR3591713Yellow flower9.625
SRP173429 SRR8316895Juvenile bud stage 20.556
SRR8316896Juvenile bud stage 27.781
SRR8316897Juvenile bud stage 13.183
SRR8316894Third green stage 11.594
SRR8316900Third green stage 32.268
SRR8316901Third green stage 30.481
SRR8316898Complete white stage 1.523
SRR8316899Complete white stage 17.436
SRR8316903Complete white stage 4.715
SRR8316902Silver flowering stage3.127
SRR8316904Silver flowering stage4.008
SRR8316905Silver flowering stage1.521
SRR8316906Gold flowering stage 4.125
SRR8316907Gold flowering stage 4.121
SRR8316908Gold flowering stage 8.913
SRP132670SRR6706286Control48.442
SRR6706287Light intensity 50%47.810
SRR6706288Light intensity 20%47.570
CNP0000432CNS0095592Slightly white alabastrum(diploid) 152.970
CNS0095593Slightly white alabastrum(diploid) 272.932
CNS0095594Slightly white alabastrum(diploid) 373.390
CNS0095595Whole white alabastrum(diploid) 243.670
CNS0095596Whole white alabastrum(diploid) 344.222
CNS0095597Whole white alabastrum(diploid) 438.523
CNS0095598Silvery flower (diploied) 126.585
CNS0095599Silvery flower (diploied) 219.367
CNS0095600Silvery flower (diploied) 39.925
CNS0095601Golden flower (diploid) 118.387
CNS0095602Golden flower (diploid) 210.726
CNS0095603Golden flower (diploid) 310.141
CNS0095604Slightly white alabastrum(tetraploid) 142.798
CNS0095605Slightly white alabastrum(tetraploid) 253.638
CNS0095606Slightly white alabastrum(tetraploid) 373.921
CNS0095607Whole white alabastrum(tetraploid) 127.157
CNS0095608Whole white alabastrum(tetraploid) 226.523
CNS0095609Whole white alabastrum(tetraploid) 349.714
CNS0095610Silvery flower (tetraploid) 118.404
CNS0095611Silvery flower (tetraploid) 212.393
CNS0095612Silvery flower (tetraploid) 35.305
CNS0095613Golden flower (tetraploid) 15.469
CNS0095614Golden flower (tetraploid) 212.597
CNS0095615Golden flower (tetraploid) 32.161
CRA001975CRR073297Stem 134.356
CRR073298Stem 235.190
CRR073299Stem 328.333
CRR073300Leaf 125.722
CRR073301Leaf 230.052
CRR073302Leaf 319.522
CRR073303Juvenile bud 121.482
CRR073304Juvenile bud 28.421
CRR073305Juvenile bud 322.164
CRR073306Third green 10.559
CRR073307Third green 20.395
CRR073308Third green 31.027
CRR073309Second white 11.541
CRR073310Second white 21.198
CRR073311Second white 31.543
CRR073312Silver flowering 10.838
CRR073313Silver flowering 21.201
CRR073314Silver flowering 31.861
CRR073315Gold flowering 16.251
CRR073316Gold flowering 27.996
CRR073317Gold flowering 35.714
CRR073318Tawny withering 118.393
CRR073319Tawny withering 214.005
CRR073320Tawny withering 321.494