Detail information of GWHGAAZE009260


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP09074.10unnamed protein product [Coffea canephora]
Swissprottr|Q9XE58|SCL14_ARATH0Scarecrow-like protein 14
trEMBLtr|A0A068ULG0|A0A068ULG0_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_36 {ECO:0000313|EMBL:CDP09074.1}
TAIR10AT1G07530.10SCARECROW-like 14

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene106605869106608097+
GWHAAZE00000002mRNA106605869106608097+
GWHAAZE00000002exon106605869106608097+
GWHAAZE00000002CDS106605869106608097+
Transcript Sequence

Network for GWHGAAZE009260

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS3687399.90E-114
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf33.489
SRR3591706second leaf21.842
SRR3591707mature leaf38.540
SRR3591708Shoot apex30.726
SRR3591709Stem55.346
SRR3591710White floral bud41.451
SRR3591711White flower50.479
SRR3591712Green floral bud37.362
SRR3591713Yellow flower36.796
SRP173429 SRR8316895Juvenile bud stage 18.601
SRR8316896Juvenile bud stage 20.107
SRR8316897Juvenile bud stage 12.994
SRR8316894Third green stage 11.355
SRR8316900Third green stage 25.182
SRR8316901Third green stage 23.963
SRR8316898Complete white stage 12.383
SRR8316899Complete white stage 57.128
SRR8316903Complete white stage 23.342
SRR8316902Silver flowering stage13.968
SRR8316904Silver flowering stage19.886
SRR8316905Silver flowering stage9.959
SRR8316906Gold flowering stage 32.463
SRR8316907Gold flowering stage 26.516
SRR8316908Gold flowering stage 38.665
SRP132670SRR6706286Control35.273
SRR6706287Light intensity 50%32.322
SRR6706288Light intensity 20%35.028
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.503
CNS0095593Slightly white alabastrum(diploid) 218.050
CNS0095594Slightly white alabastrum(diploid) 314.954
CNS0095595Whole white alabastrum(diploid) 216.441
CNS0095596Whole white alabastrum(diploid) 311.630
CNS0095597Whole white alabastrum(diploid) 416.407
CNS0095598Silvery flower (diploied) 135.366
CNS0095599Silvery flower (diploied) 227.002
CNS0095600Silvery flower (diploied) 351.559
CNS0095601Golden flower (diploid) 138.677
CNS0095602Golden flower (diploid) 267.537
CNS0095603Golden flower (diploid) 367.939
CNS0095604Slightly white alabastrum(tetraploid) 118.158
CNS0095605Slightly white alabastrum(tetraploid) 214.802
CNS0095606Slightly white alabastrum(tetraploid) 340.133
CNS0095607Whole white alabastrum(tetraploid) 112.693
CNS0095608Whole white alabastrum(tetraploid) 211.254
CNS0095609Whole white alabastrum(tetraploid) 323.547
CNS0095610Silvery flower (tetraploid) 156.539
CNS0095611Silvery flower (tetraploid) 269.887
CNS0095612Silvery flower (tetraploid) 336.742
CNS0095613Golden flower (tetraploid) 131.362
CNS0095614Golden flower (tetraploid) 255.661
CNS0095615Golden flower (tetraploid) 357.406
CRA001975CRR073297Stem 131.118
CRR073298Stem 227.161
CRR073299Stem 333.051
CRR073300Leaf 130.908
CRR073301Leaf 225.042
CRR073302Leaf 327.547
CRR073303Juvenile bud 129.974
CRR073304Juvenile bud 222.091
CRR073305Juvenile bud 343.252
CRR073306Third green 18.430
CRR073307Third green 28.460
CRR073308Third green 39.713
CRR073309Second white 114.951
CRR073310Second white 29.616
CRR073311Second white 312.645
CRR073312Silver flowering 17.770
CRR073313Silver flowering 210.558
CRR073314Silver flowering 310.256
CRR073315Gold flowering 127.681
CRR073316Gold flowering 237.648
CRR073317Gold flowering 351.256
CRR073318Tawny withering 131.889
CRR073319Tawny withering 220.318
CRR073320Tawny withering 327.352