Detail information of GWHGAAZE009269


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002283159.18.3763E-109PREDICTED: transcription factor PCL1 [Vitis vinifera]
Swissprottr|Q9SNB4|PCL1_ARATH4E-82Transcription factor LUX
trEMBLtr|F6GUZ0|F6GUZ0_VITVI3E-109Putative uncharacterized protein {ECO:0000313|EMBL:CCB43549.1}
TAIR10AT3G46640.26E-63Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene106840044106840856+
GWHAAZE00000002mRNA106840044106840856+
GWHAAZE00000002exon106840044106840349+
GWHAAZE00000002exon106840404106840856+
GWHAAZE00000002CDS106840044106840349+
GWHAAZE00000002CDS106840404106840856+
Transcript Sequence

Network for GWHGAAZE009269

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.32Myb_DNA-binding1181668.70E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGARP-G2-like

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.697
SRR3591706second leaf0.975
SRR3591707mature leaf0.660
SRR3591708Shoot apex3.886
SRR3591709Stem11.162
SRR3591710White floral bud20.583
SRR3591711White flower28.946
SRR3591712Green floral bud17.232
SRR3591713Yellow flower18.968
SRP173429 SRR8316895Juvenile bud stage 7.914
SRR8316896Juvenile bud stage 12.831
SRR8316897Juvenile bud stage 6.655
SRR8316894Third green stage 3.775
SRR8316900Third green stage 17.696
SRR8316901Third green stage 14.330
SRR8316898Complete white stage 4.718
SRR8316899Complete white stage 15.677
SRR8316903Complete white stage 8.207
SRR8316902Silver flowering stage3.962
SRR8316904Silver flowering stage7.819
SRR8316905Silver flowering stage4.418
SRR8316906Gold flowering stage 7.059
SRR8316907Gold flowering stage 6.169
SRR8316908Gold flowering stage 19.122
SRP132670SRR6706286Control16.923
SRR6706287Light intensity 50%15.296
SRR6706288Light intensity 20%13.664
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.955
CNS0095593Slightly white alabastrum(diploid) 213.559
CNS0095594Slightly white alabastrum(diploid) 313.164
CNS0095595Whole white alabastrum(diploid) 221.275
CNS0095596Whole white alabastrum(diploid) 320.451
CNS0095597Whole white alabastrum(diploid) 426.873
CNS0095598Silvery flower (diploied) 19.221
CNS0095599Silvery flower (diploied) 25.443
CNS0095600Silvery flower (diploied) 313.611
CNS0095601Golden flower (diploid) 18.010
CNS0095602Golden flower (diploid) 213.649
CNS0095603Golden flower (diploid) 314.621
CNS0095604Slightly white alabastrum(tetraploid) 115.537
CNS0095605Slightly white alabastrum(tetraploid) 218.219
CNS0095606Slightly white alabastrum(tetraploid) 315.049
CNS0095607Whole white alabastrum(tetraploid) 125.533
CNS0095608Whole white alabastrum(tetraploid) 222.319
CNS0095609Whole white alabastrum(tetraploid) 319.211
CNS0095610Silvery flower (tetraploid) 135.542
CNS0095611Silvery flower (tetraploid) 234.658
CNS0095612Silvery flower (tetraploid) 3133.822
CNS0095613Golden flower (tetraploid) 118.981
CNS0095614Golden flower (tetraploid) 216.892
CNS0095615Golden flower (tetraploid) 314.949
CRA001975CRR073297Stem 172.240
CRR073298Stem 265.931
CRR073299Stem 380.562
CRR073300Leaf 181.327
CRR073301Leaf 276.947
CRR073302Leaf 390.076
CRR073303Juvenile bud 191.338
CRR073304Juvenile bud 271.715
CRR073305Juvenile bud 370.800
CRR073306Third green 142.863
CRR073307Third green 257.878
CRR073308Third green 335.911
CRR073309Second white 143.240
CRR073310Second white 235.650
CRR073311Second white 330.131
CRR073312Silver flowering 125.271
CRR073313Silver flowering 224.804
CRR073314Silver flowering 322.720
CRR073315Gold flowering 126.671
CRR073316Gold flowering 229.076
CRR073317Gold flowering 336.707
CRR073318Tawny withering 158.819
CRR073319Tawny withering 236.609
CRR073320Tawny withering 352.709