Detail information of GWHGAAZE009278


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009771906.10PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Nicotiana sylvestris]
Swissprottr|O04857|PP12_TOBAC0Serine/threonine-protein phosphatase PP1 isozyme 2
trEMBLtr|K4CA03|K4CA03_SOLLC0Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273}
TAIR10AT5G59160.31E-154type one serine/threonine protein phosphatase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene107051192107056021-
GWHAAZE00000002mRNA107051192107056021-
GWHAAZE00000002exon107051192107051231-
GWHAAZE00000002exon107051360107051523-
GWHAAZE00000002exon107051620107052161-
GWHAAZE00000002exon107055724107056021-
GWHAAZE00000002five_prime_UTR107055923107056021-
GWHAAZE00000002CDS107055724107055922-
GWHAAZE00000002CDS107051620107052161-
GWHAAZE00000002CDS107051360107051523-
GWHAAZE00000002CDS107051192107051231-
Transcript Sequence

Network for GWHGAAZE009278

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16891.6STPPase_N13604.40E-21
PF00149.29Metallophos622491.60E-37
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K06269PPP1C mRNA surveillance pathway map03015
Hippo signaling pathwaymap04390
cAMP signaling pathwaymap04024
cGMP-PKG signaling pathwaymap04022
Meiosis - yeastmap04113
Oocyte meiosismap04114
Cellular senescencemap04218
Focal adhesionmap04510
Regulation of actin cytoskeletonmap04810
Platelet activationmap04611
Insulin signaling pathwaymap04910
Oxytocin signaling pathwaymap04921
Adrenergic signaling in cardiomyocytesmap04261
Vascular smooth muscle contractionmap04270
Dopaminergic synapsemap04728
Long-term potentiationmap04720
Inflammatory mediator regulation of TRP channelsmap04750

Gene Ontology

GO term OntologyName
GO:0016787molecular_functionhydrolase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf39.091
SRR3591706second leaf24.576
SRR3591707mature leaf24.250
SRR3591708Shoot apex33.340
SRR3591709Stem30.274
SRR3591710White floral bud34.381
SRR3591711White flower31.497
SRR3591712Green floral bud33.637
SRR3591713Yellow flower29.568
SRP173429 SRR8316895Juvenile bud stage 14.195
SRR8316896Juvenile bud stage 19.873
SRR8316897Juvenile bud stage 9.594
SRR8316894Third green stage 9.793
SRR8316900Third green stage 29.627
SRR8316901Third green stage 30.684
SRR8316898Complete white stage 14.521
SRR8316899Complete white stage 38.389
SRR8316903Complete white stage 20.482
SRR8316902Silver flowering stage12.481
SRR8316904Silver flowering stage18.201
SRR8316905Silver flowering stage8.289
SRR8316906Gold flowering stage 21.543
SRR8316907Gold flowering stage 22.004
SRR8316908Gold flowering stage 22.399
SRP132670SRR6706286Control29.694
SRR6706287Light intensity 50%28.688
SRR6706288Light intensity 20%30.678
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.522
CNS0095593Slightly white alabastrum(diploid) 215.954
CNS0095594Slightly white alabastrum(diploid) 317.256
CNS0095595Whole white alabastrum(diploid) 220.739
CNS0095596Whole white alabastrum(diploid) 323.402
CNS0095597Whole white alabastrum(diploid) 417.546
CNS0095598Silvery flower (diploied) 115.610
CNS0095599Silvery flower (diploied) 212.845
CNS0095600Silvery flower (diploied) 323.927
CNS0095601Golden flower (diploid) 112.831
CNS0095602Golden flower (diploid) 221.608
CNS0095603Golden flower (diploid) 318.916
CNS0095604Slightly white alabastrum(tetraploid) 129.420
CNS0095605Slightly white alabastrum(tetraploid) 227.855
CNS0095606Slightly white alabastrum(tetraploid) 332.256
CNS0095607Whole white alabastrum(tetraploid) 123.056
CNS0095608Whole white alabastrum(tetraploid) 223.125
CNS0095609Whole white alabastrum(tetraploid) 330.178
CNS0095610Silvery flower (tetraploid) 125.231
CNS0095611Silvery flower (tetraploid) 227.908
CNS0095612Silvery flower (tetraploid) 329.742
CNS0095613Golden flower (tetraploid) 114.769
CNS0095614Golden flower (tetraploid) 220.586
CNS0095615Golden flower (tetraploid) 322.363
CRA001975CRR073297Stem 128.635
CRR073298Stem 225.780
CRR073299Stem 323.484
CRR073300Leaf 131.721
CRR073301Leaf 230.945
CRR073302Leaf 333.079
CRR073303Juvenile bud 136.738
CRR073304Juvenile bud 227.886
CRR073305Juvenile bud 329.545
CRR073306Third green 131.506
CRR073307Third green 226.241
CRR073308Third green 324.729
CRR073309Second white 128.074
CRR073310Second white 227.345
CRR073311Second white 323.051
CRR073312Silver flowering 119.888
CRR073313Silver flowering 217.443
CRR073314Silver flowering 319.457
CRR073315Gold flowering 116.912
CRR073316Gold flowering 224.818
CRR073317Gold flowering 317.499
CRR073318Tawny withering 125.407
CRR073319Tawny withering 216.117
CRR073320Tawny withering 326.482