Detail information of GWHGAAZE009302


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHG05288.11.18492E-56Tubulin beta-1 chain [Gossypium arboreum]
Swissprottr|P20364|TBB1_DAUCA2E-55Tubulin beta-1 chain (Fragment)
trEMBLtr|M0S0N7|M0S0N7_MUSAM3E-79Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P17290_001}
TAIR10AT1G20010.15E-37tubulin beta-5 chain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene107302597107305455-
GWHAAZE00000002mRNA107302597107305455-
GWHAAZE00000002exon107302597107302872-
GWHAAZE00000002exon107305267107305455-
GWHAAZE00000002CDS107305267107305455-
GWHAAZE00000002CDS107302597107302872-
Transcript Sequence

Network for GWHGAAZE009302

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00091.26Tubulin641401.80E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07375TUBB Phagosome map04145
Gap junctionmap04540

Gene Ontology

GO term OntologyName
GO:0007017biological_processmicrotubule-based process
GO:0005874cellular_componentmicrotubule
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf346.684
SRR3591706second leaf87.084
SRR3591707mature leaf46.663
SRR3591708Shoot apex320.955
SRR3591709Stem129.660
SRR3591710White floral bud529.336
SRR3591711White flower100.894
SRR3591712Green floral bud533.799
SRR3591713Yellow flower72.293
SRP173429 SRR8316895Juvenile bud stage 110.837
SRR8316896Juvenile bud stage 220.376
SRR8316897Juvenile bud stage 95.015
SRR8316894Third green stage 95.295
SRR8316900Third green stage 382.559
SRR8316901Third green stage 401.693
SRR8316898Complete white stage 79.742
SRR8316899Complete white stage 199.779
SRR8316903Complete white stage 116.411
SRR8316902Silver flowering stage57.820
SRR8316904Silver flowering stage71.339
SRR8316905Silver flowering stage34.384
SRR8316906Gold flowering stage 154.264
SRR8316907Gold flowering stage 135.691
SRR8316908Gold flowering stage 150.889
SRP132670SRR6706286Control220.707
SRR6706287Light intensity 50%239.973
SRR6706288Light intensity 20%241.228
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1317.207
CNS0095593Slightly white alabastrum(diploid) 2304.967
CNS0095594Slightly white alabastrum(diploid) 3336.200
CNS0095595Whole white alabastrum(diploid) 2552.490
CNS0095596Whole white alabastrum(diploid) 3649.648
CNS0095597Whole white alabastrum(diploid) 4681.601
CNS0095598Silvery flower (diploied) 1119.922
CNS0095599Silvery flower (diploied) 2153.616
CNS0095600Silvery flower (diploied) 3148.116
CNS0095601Golden flower (diploid) 1118.164
CNS0095602Golden flower (diploid) 2152.742
CNS0095603Golden flower (diploid) 3148.540
CNS0095604Slightly white alabastrum(tetraploid) 1565.772
CNS0095605Slightly white alabastrum(tetraploid) 2600.459
CNS0095606Slightly white alabastrum(tetraploid) 3292.144
CNS0095607Whole white alabastrum(tetraploid) 1867.171
CNS0095608Whole white alabastrum(tetraploid) 2840.288
CNS0095609Whole white alabastrum(tetraploid) 3562.967
CNS0095610Silvery flower (tetraploid) 1141.868
CNS0095611Silvery flower (tetraploid) 2186.140
CNS0095612Silvery flower (tetraploid) 3253.425
CNS0095613Golden flower (tetraploid) 197.244
CNS0095614Golden flower (tetraploid) 2119.380
CNS0095615Golden flower (tetraploid) 3165.405
CRA001975CRR073297Stem 1292.039
CRR073298Stem 2319.958
CRR073299Stem 3357.164
CRR073300Leaf 1587.952
CRR073301Leaf 2463.225
CRR073302Leaf 3543.547
CRR073303Juvenile bud 1578.954
CRR073304Juvenile bud 2540.487
CRR073305Juvenile bud 3385.430
CRR073306Third green 1302.874
CRR073307Third green 2307.611
CRR073308Third green 3294.342
CRR073309Second white 1176.044
CRR073310Second white 2150.722
CRR073311Second white 3144.729
CRR073312Silver flowering 1235.745
CRR073313Silver flowering 2286.778
CRR073314Silver flowering 3195.631
CRR073315Gold flowering 1180.694
CRR073316Gold flowering 2124.609
CRR073317Gold flowering 3138.426
CRR073318Tawny withering 1374.491
CRR073319Tawny withering 2240.525
CRR073320Tawny withering 3361.231