Gene detail

Detail information of GWHGAAZE009309

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011089408.1	0	PREDICTED: proliferating cell nuclear antigen [Sesamum indicum]
Swissprot	tr\|O82797\|PCNA_TOBAC	0	Proliferating cell nuclear antigen
trEMBL	tr\|A5B6U5\|A5B6U5_VITVI	0	Proliferating cell nuclear antigen {ECO:0000256\|RuleBase:RU000641}
TAIR10	AT2G29570.1	1E-141	proliferating cell nuclear antigen 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	107409694	107413028	-
GWHAAZE00000002	mRNA	107409694	107413028	-
GWHAAZE00000002	exon	107412667	107413028	-
GWHAAZE00000002	exon	107410603	107410755	-
GWHAAZE00000002	exon	107410380	107410477	-
GWHAAZE00000002	exon	107409694	107409918	-
GWHAAZE00000002	five_prime_UTR	107412986	107413028	-
GWHAAZE00000002	CDS	107412667	107412985	-
GWHAAZE00000002	CDS	107410603	107410755	-
GWHAAZE00000002	CDS	107410380	107410477	-
GWHAAZE00000002	CDS	107409694	107409918	-

Transcript Sequence
>GWHTAAZE009319 ATCCCGACATTTTCCCGAGAACCAAAAAGAAAGTCGAAAAAGGATGTTAGAACTAAGGCTAGTTCAGGGGAGTCTACTGAAGAAGGTGATGGAATCGATCAAGGACTTGGTCAACGATGCCAATTTCGACTGCTCGGCCACCGGATTCTCTCTCCAGGCCATGGATTCGAGCCACGTTGCCCTAGTTTCTCTATTGCTCAGATCGGAGGGTTTTGAGCACTACCGGTGTGATCGTAATATTTCTATGGGGATGAATCTGAATAATATGTCCAAGATGCTAAAGTGCGCCGGTAATGACGATATTATCACTATCAAGGCTGATGATGGCAGTGATACTGTTACGTTCATGTTTGAAAGCCCCACGCAAGATAAAATTGCTGATTTTGAAATGAAACTTATGGATATCGATAGTGAGCACCTGGGGATCCCAGAAGCTGAGTATCATGCTATTGTCCGGATGCCTTCTACTGAATTTGCAAGGATTTGTAAAGATCTCAGCAGCATTGGTGACACAGTTGTCATCTCAGTAACAAAGGAAGGTGTTAAGTTCTCAACAAGAGGCGATATAGGAACTGCAAATGTTGTTTGCCGTCAGAATAACACAGTGGACAAGCCAGAGGAGGCTACAATTATAGAGATGAATGAACCAGTGTCACTAACGTTTGCCCTAAGATACATGAATTCCTTCACCAAAGCAACTCCGTTGTCGAATACAGTTACGATCAGCTTATCTTCAGAGCTTCCTGTTGTGGTAGAGTACAAGATAGCCGAGATGGGTTATATAAGGTTCTACTTGGCACCTAAGATTGAAGAAGATGATGAAGAGGCTAAGCCTTGA

Network for GWHGAAZE009309

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00705.19	PCNA_N	1	125	7.60E-59
PF02747.16	PCNA_C	127	254	3.60E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04802	PCNA	DNA replication	map03030
		Base excision repair	map03410
		Nucleotide excision repair	map03420
		Mismatch repair	map03430
		Cell cycle	map04110
		Tight junction	map04530

Gene Ontology

GO term	Ontology	Name
GO:0006275	biological_process	regulation of DNA replication
GO:0003677	molecular_function	DNA binding
GO:0030337	molecular_function	DNA polymerase processivity factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.971
	SRR3591706	second leaf	3.111
	SRR3591707	mature leaf	3.359
	SRR3591708	Shoot apex	24.763
	SRR3591709	Stem	5.627
	SRR3591710	White floral bud	3.427
	SRR3591711	White flower	5.000
	SRR3591712	Green floral bud	5.344
	SRR3591713	Yellow flower	2.566
SRP173429	SRR8316895	Juvenile bud stage	6.075
	SRR8316896	Juvenile bud stage	7.917
	SRR8316897	Juvenile bud stage	4.206
	SRR8316894	Third green stage	3.074
	SRR8316900	Third green stage	6.159
	SRR8316901	Third green stage	5.117
	SRR8316898	Complete white stage	1.205
	SRR8316899	Complete white stage	5.570
	SRR8316903	Complete white stage	0.957
	SRR8316902	Silver flowering stage	0.785
	SRR8316904	Silver flowering stage	1.178
	SRR8316905	Silver flowering stage	0.481
	SRR8316906	Gold flowering stage	2.140
	SRR8316907	Gold flowering stage	2.112
	SRR8316908	Gold flowering stage	2.718
SRP132670	SRR6706286	Control	3.868
	SRR6706287	Light intensity 50%	3.549
	SRR6706288	Light intensity 20%	4.640
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.263
	CNS0095593	Slightly white alabastrum(diploid) 2	4.240
	CNS0095594	Slightly white alabastrum(diploid) 3	5.926
	CNS0095595	Whole white alabastrum(diploid) 2	3.925
	CNS0095596	Whole white alabastrum(diploid) 3	2.540
	CNS0095597	Whole white alabastrum(diploid) 4	3.457
	CNS0095598	Silvery flower (diploied) 1	2.650
	CNS0095599	Silvery flower (diploied) 2	3.498
	CNS0095600	Silvery flower (diploied) 3	1.253
	CNS0095601	Golden flower (diploid) 1	1.545
	CNS0095602	Golden flower (diploid) 2	1.991
	CNS0095603	Golden flower (diploid) 3	2.027
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.461
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.435
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.805
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.727
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.114
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.188
	CNS0095610	Silvery flower (tetraploid) 1	3.973
	CNS0095611	Silvery flower (tetraploid) 2	2.447
	CNS0095612	Silvery flower (tetraploid) 3	2.576
	CNS0095613	Golden flower (tetraploid) 1	1.885
	CNS0095614	Golden flower (tetraploid) 2	2.358
	CNS0095615	Golden flower (tetraploid) 3	1.387
CRA001975	CRR073297	Stem 1	5.039
	CRR073298	Stem 2	6.027
	CRR073299	Stem 3	8.250
	CRR073300	Leaf 1	1.979
	CRR073301	Leaf 2	1.746
	CRR073302	Leaf 3	4.325
	CRR073303	Juvenile bud 1	3.563
	CRR073304	Juvenile bud 2	2.818
	CRR073305	Juvenile bud 3	2.027
	CRR073306	Third green 1	0.076
	CRR073307	Third green 2	0.540
	CRR073308	Third green 3	0.705
	CRR073309	Second white 1	0.387
	CRR073310	Second white 2	0.315
	CRR073311	Second white 3	0.285
	CRR073312	Silver flowering 1	0.575
	CRR073313	Silver flowering 2	0.216
	CRR073314	Silver flowering 3	0.613
	CRR073315	Gold flowering 1	1.419
	CRR073316	Gold flowering 2	0.951
	CRR073317	Gold flowering 3	0.936
	CRR073318	Tawny withering 1	6.848
	CRR073319	Tawny withering 2	5.277
	CRR073320	Tawny withering 3	9.320