Detail information of GWHGAAZE009315


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP09144.10unnamed protein product [Coffea canephora]
Swissprottr|P32811|PHSH_SOLTU0Alpha-glucan phosphorylase, H isozyme
trEMBLtr|A0A068ULN6|A0A068ULN6_COFCA0Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}
TAIR10AT3G46970.10alpha-glucan phosphorylase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene107502667107515886-
GWHAAZE00000002mRNA107502667107515886-
GWHAAZE00000002exon107515674107515886-
GWHAAZE00000002exon107514320107514499-
GWHAAZE00000002exon107508355107508531-
GWHAAZE00000002exon107508187107508272-
GWHAAZE00000002exon107507842107508031-
GWHAAZE00000002exon107507614107507706-
GWHAAZE00000002exon107507309107507493-
GWHAAZE00000002exon107507074107507191-
GWHAAZE00000002exon107506857107506985-
GWHAAZE00000002exon107505731107505949-
GWHAAZE00000002exon107505122107505325-
GWHAAZE00000002exon107504551107504709-
GWHAAZE00000002exon107503593107503856-
GWHAAZE00000002exon107503307107503497-
GWHAAZE00000002exon107502667107502793-
GWHAAZE00000002CDS107515674107515886-
GWHAAZE00000002CDS107514320107514499-
GWHAAZE00000002CDS107508355107508531-
GWHAAZE00000002CDS107508187107508272-
GWHAAZE00000002CDS107507842107508031-
GWHAAZE00000002CDS107507614107507706-
GWHAAZE00000002CDS107507309107507493-
GWHAAZE00000002CDS107507074107507191-
GWHAAZE00000002CDS107506857107506985-
GWHAAZE00000002CDS107505731107505949-
GWHAAZE00000002CDS107505122107505325-
GWHAAZE00000002CDS107504551107504709-
GWHAAZE00000002CDS107503593107503856-
GWHAAZE00000002CDS107503307107503497-
GWHAAZE00000002CDS107502667107502793-
Transcript Sequence

Network for GWHGAAZE009315

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00343.21Phosphorylase1188382.40E-303
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00688PYG, glgP Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500
Necroptosismap04217
Biofilm formation - Escherichia colimap02026
Insulin signaling pathwaymap04910
Glucagon signaling pathwaymap04922

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0008184molecular_functionglycogen phosphorylase activity
GO:0004645molecular_function1,4-alpha-oligoglucan phosphorylase activity
GO:0030170molecular_functionpyridoxal phosphate binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.728
SRR3591706second leaf37.539
SRR3591707mature leaf35.754
SRR3591708Shoot apex16.033
SRR3591709Stem22.113
SRR3591710White floral bud30.514
SRR3591711White flower21.783
SRR3591712Green floral bud48.043
SRR3591713Yellow flower10.489
SRP173429 SRR8316895Juvenile bud stage 26.052
SRR8316896Juvenile bud stage 32.839
SRR8316897Juvenile bud stage 15.581
SRR8316894Third green stage 13.856
SRR8316900Third green stage 33.054
SRR8316901Third green stage 33.092
SRR8316898Complete white stage 10.679
SRR8316899Complete white stage 41.608
SRR8316903Complete white stage 20.019
SRR8316902Silver flowering stage5.411
SRR8316904Silver flowering stage6.173
SRR8316905Silver flowering stage2.582
SRR8316906Gold flowering stage 8.806
SRR8316907Gold flowering stage 9.774
SRR8316908Gold flowering stage 8.774
SRP132670SRR6706286Control28.279
SRR6706287Light intensity 50%32.584
SRR6706288Light intensity 20%35.194
CNP0000432CNS0095592Slightly white alabastrum(diploid) 122.011
CNS0095593Slightly white alabastrum(diploid) 222.419
CNS0095594Slightly white alabastrum(diploid) 321.902
CNS0095595Whole white alabastrum(diploid) 222.497
CNS0095596Whole white alabastrum(diploid) 319.395
CNS0095597Whole white alabastrum(diploid) 422.657
CNS0095598Silvery flower (diploied) 127.857
CNS0095599Silvery flower (diploied) 228.872
CNS0095600Silvery flower (diploied) 326.465
CNS0095601Golden flower (diploid) 119.405
CNS0095602Golden flower (diploid) 225.396
CNS0095603Golden flower (diploid) 321.420
CNS0095604Slightly white alabastrum(tetraploid) 129.758
CNS0095605Slightly white alabastrum(tetraploid) 223.703
CNS0095606Slightly white alabastrum(tetraploid) 352.167
CNS0095607Whole white alabastrum(tetraploid) 121.572
CNS0095608Whole white alabastrum(tetraploid) 218.875
CNS0095609Whole white alabastrum(tetraploid) 341.369
CNS0095610Silvery flower (tetraploid) 127.728
CNS0095611Silvery flower (tetraploid) 234.614
CNS0095612Silvery flower (tetraploid) 322.846
CNS0095613Golden flower (tetraploid) 17.383
CNS0095614Golden flower (tetraploid) 216.137
CNS0095615Golden flower (tetraploid) 32.342
CRA001975CRR073297Stem 144.357
CRR073298Stem 236.741
CRR073299Stem 335.554
CRR073300Leaf 141.637
CRR073301Leaf 235.407
CRR073302Leaf 330.033
CRR073303Juvenile bud 140.347
CRR073304Juvenile bud 229.133
CRR073305Juvenile bud 354.045
CRR073306Third green 15.539
CRR073307Third green 25.688
CRR073308Third green 36.518
CRR073309Second white 17.404
CRR073310Second white 24.886
CRR073311Second white 33.926
CRR073312Silver flowering 11.480
CRR073313Silver flowering 21.933
CRR073314Silver flowering 32.307
CRR073315Gold flowering 157.874
CRR073316Gold flowering 290.576
CRR073317Gold flowering 351.755
CRR073318Tawny withering 125.839
CRR073319Tawny withering 223.980
CRR073320Tawny withering 322.788