Gene detail

Detail information of GWHGAAZE009341

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007016114.1	Damaged DNA binding 2 [Theobroma cacao]
Swissprot	tr\|Q6NQ88\|DDB2_ARATH	Protein DAMAGED DNA-BINDING 2
trEMBL	tr\|A0A061GWF2\|A0A061GWF2_THECC	Damaged DNA binding 2 {ECO:0000313\|EMBL:EOY33733.1}
TAIR10	AT5G58760.1	damaged DNA binding 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	108150975	108156169	+
GWHAAZE00000002	mRNA	108150975	108156169	+
GWHAAZE00000002	exon	108150975	108151220	+
GWHAAZE00000002	exon	108151467	108151557	+
GWHAAZE00000002	exon	108152698	108152825	+
GWHAAZE00000002	exon	108153831	108153953	+
GWHAAZE00000002	exon	108154057	108154145	+
GWHAAZE00000002	exon	108154268	108154388	+
GWHAAZE00000002	exon	108154567	108154595	+
GWHAAZE00000002	exon	108154713	108154805	+
GWHAAZE00000002	exon	108155080	108155209	+
GWHAAZE00000002	exon	108155349	108155594	+
GWHAAZE00000002	exon	108155918	108156169	+
GWHAAZE00000002	CDS	108150975	108151220	+
GWHAAZE00000002	CDS	108151467	108151557	+
GWHAAZE00000002	CDS	108152698	108152825	+
GWHAAZE00000002	CDS	108153831	108153953	+
GWHAAZE00000002	CDS	108154057	108154145	+
GWHAAZE00000002	CDS	108154268	108154388	+
GWHAAZE00000002	CDS	108154567	108154595	+
GWHAAZE00000002	CDS	108154713	108154805	+
GWHAAZE00000002	CDS	108155080	108155209	+
GWHAAZE00000002	CDS	108155349	108155594	+
GWHAAZE00000002	CDS	108155918	108156169	+

Transcript Sequence
>GWHTAAZE009351 AAAGAAAAAATGGCTCCACAAACAAGAGGGAATTCGTTTCCTAGAGTGGTGATAGAGAGAGACAACGATTCCGAGGAAAGTTCTTCGGATGAAGAAATGGAAGACGAGGACGTAGAAGAAACAGAGGATGAGGATGAGGATGAAGTTGAAGAGGCCACGAGTGAGTTGAAAATCGAAGTGGATGCGCGGGTGGCGAAGAAATTAAAGAAATCTCCGATCAATATCAGTCTTAAAAAAGTTTGCAAAGTGTGCAAGAGAACGGGTCACGAAGCGGGGTTTAAGGGGGCTACTTACATTGATTGCCCAATGAAACCTTGCTTTCTCTGCAAATTGCCTGGCCACACTACAATTGCTTGTCCTCATCGAGTGGCCACAGAGTACGGAGTGATCCCTGCTTCGCATAAACGGAAACTCAACTCACTGGAGTATGTCCTTGAACGTCAGCTTAGGCCTAAAATTCCTAAAATTAAACCAGCATTTGTAATCCCGGATGAAGTGAACTGTGCGGTTGTTAGATACCACAGTAGACGAGTTACATGCTTGGAGTTCCATCCGACAAACAATAACATTCTGTTGTCTGGTGATAAGAAAGGACAGCTTGGAGTTTGGGATTTTGAAAAGGTGCACGAAAAGACAGTTTATGGGAACATACACAGTTGCATACTTAACCATATGAAATTCAATCCAAGAAATGATGGAACAGTATATGGGGCATCCTCGGATGGAACCGTAAGTTGCATTGACTTGGAGACTGGAATATCATCATCATTGATGAACCTTAATCCTAATGGTTGGCAGGTCAACCTTGTGCCCTCCCCCATTTCTACGGTGGTAAAACATGGAGGATGCTCTATGGGTTGGATATTAACTCGGGACAAGGGCCTTGTGCTTGTTGCAGATAATTTTGGATATATGTACTCGGTGGACATGTGCTCTAACAGCAAAGTTGGGGAGGCTGTGTTGATTCATAAGAAAGGAAGTAAAGTTGTGGGGCTACACTGCAATCCTCTTCAGCCAGATCTCCTGTTGAGTTGTGGAAATGATCACTTCGCTCGTATATGGGACATGCGTCGCTTAGAAGCTAGAACTTCTCTTTATGAGCTTTCACACAAGCGTGTGGTTAACTCAGCATATTTTTCTCCAAGTGGCAGTAAAATACTTACTACATCACAGGACAATCGTCTTCGGATTTGGGATTCAATTTTTGGGAATTTGGATTCCCCAAGTCGGGAAATTGTACATAGTCATGATTTTAGCCGCCATCTTACTCCGTTTCGAGCTGAATGGGATCCAAAGGACCCATCTGAGTCCCTTGTAGTTATTGGGCGTTACATTAGTGAAAATTATGGTGGAGTGGCCTTGCATCCCATTGATTTTATAGACATCAGCACTGGCCAATTAGCTGCGGAGGTCATGGACCCGAACATTACAACAATCAGTCCTGTGAACAAGCTACATCCACGTGATGATGTTTTGGCGTCTGGTAACTCAAGGTTTGGACTTTATTATCCTTGTTACAAAATTCGGATGACGTTTCTTATTACTTAA

Network for GWHGAAZE009341

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	174	204	0.071
PF00400.33	WD40	367	399	0.0025

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K10140	DDB2	Ubiquitin mediated proteolysis	map04120
		Nucleotide excision repair	map03420
		p53 signaling pathway	map04115

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.414
	SRR3591706	second leaf	16.313
	SRR3591707	mature leaf	23.291
	SRR3591708	Shoot apex	20.680
	SRR3591709	Stem	12.348
	SRR3591710	White floral bud	12.934
	SRR3591711	White flower	22.213
	SRR3591712	Green floral bud	10.286
	SRR3591713	Yellow flower	18.889
SRP173429	SRR8316895	Juvenile bud stage	10.780
	SRR8316896	Juvenile bud stage	16.389
	SRR8316897	Juvenile bud stage	4.960
	SRR8316894	Third green stage	6.915
	SRR8316900	Third green stage	15.608
	SRR8316901	Third green stage	17.257
	SRR8316898	Complete white stage	6.492
	SRR8316899	Complete white stage	27.665
	SRR8316903	Complete white stage	9.424
	SRR8316902	Silver flowering stage	9.885
	SRR8316904	Silver flowering stage	12.756
	SRR8316905	Silver flowering stage	5.888
	SRR8316906	Gold flowering stage	17.961
	SRR8316907	Gold flowering stage	13.948
	SRR8316908	Gold flowering stage	16.701
SRP132670	SRR6706286	Control	17.144
	SRR6706287	Light intensity 50%	15.750
	SRR6706288	Light intensity 20%	15.754
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.630
	CNS0095593	Slightly white alabastrum(diploid) 2	8.027
	CNS0095594	Slightly white alabastrum(diploid) 3	6.692
	CNS0095595	Whole white alabastrum(diploid) 2	8.447
	CNS0095596	Whole white alabastrum(diploid) 3	5.923
	CNS0095597	Whole white alabastrum(diploid) 4	6.500
	CNS0095598	Silvery flower (diploied) 1	20.149
	CNS0095599	Silvery flower (diploied) 2	14.772
	CNS0095600	Silvery flower (diploied) 3	24.479
	CNS0095601	Golden flower (diploid) 1	17.645
	CNS0095602	Golden flower (diploid) 2	23.481
	CNS0095603	Golden flower (diploid) 3	24.113
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.374
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.771
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.757
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.743
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.103
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.212
	CNS0095610	Silvery flower (tetraploid) 1	38.887
	CNS0095611	Silvery flower (tetraploid) 2	36.271
	CNS0095612	Silvery flower (tetraploid) 3	13.791
	CNS0095613	Golden flower (tetraploid) 1	22.428
	CNS0095614	Golden flower (tetraploid) 2	33.878
	CNS0095615	Golden flower (tetraploid) 3	16.082
CRA001975	CRR073297	Stem 1	10.573
	CRR073298	Stem 2	11.461
	CRR073299	Stem 3	11.263
	CRR073300	Leaf 1	12.650
	CRR073301	Leaf 2	11.602
	CRR073302	Leaf 3	8.765
	CRR073303	Juvenile bud 1	8.109
	CRR073304	Juvenile bud 2	5.070
	CRR073305	Juvenile bud 3	10.106
	CRR073306	Third green 1	1.979
	CRR073307	Third green 2	2.040
	CRR073308	Third green 3	2.331
	CRR073309	Second white 1	2.519
	CRR073310	Second white 2	6.656
	CRR073311	Second white 3	4.428
	CRR073312	Silver flowering 1	3.456
	CRR073313	Silver flowering 2	2.813
	CRR073314	Silver flowering 3	2.043
	CRR073315	Gold flowering 1	11.690
	CRR073316	Gold flowering 2	14.356
	CRR073317	Gold flowering 3	6.169
	CRR073318	Tawny withering 1	10.460
	CRR073319	Tawny withering 2	9.097
	CRR073320	Tawny withering 3	10.299