Gene detail

Detail information of GWHGAAZE009345

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279069.2	3.8772E-115	PREDICTED: uncharacterized protein LOC100258653 [Vitis vinifera]
Swissprot	tr\|Q9FPH0\|XB34_ARATH	0.000000005	Putative E3 ubiquitin-protein ligase XBAT34
trEMBL	tr\|D7SJX7\|D7SJX7_VITVI	1E-115	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15953.3}
TAIR10	AT2G38185.2	3E-50	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	108231564	108235551	+
GWHAAZE00000002	mRNA	108231564	108235551	+
GWHAAZE00000002	exon	108231564	108231655	+
GWHAAZE00000002	exon	108232007	108232053	+
GWHAAZE00000002	exon	108232389	108232508	+
GWHAAZE00000002	exon	108232621	108232703	+
GWHAAZE00000002	exon	108232833	108232979	+
GWHAAZE00000002	exon	108234573	108234853	+
GWHAAZE00000002	exon	108235007	108235551	+
GWHAAZE00000002	CDS	108231564	108231655	+
GWHAAZE00000002	CDS	108232007	108232053	+
GWHAAZE00000002	CDS	108232389	108232508	+
GWHAAZE00000002	CDS	108232621	108232703	+
GWHAAZE00000002	CDS	108232833	108232979	+
GWHAAZE00000002	CDS	108234573	108234853	+
GWHAAZE00000002	CDS	108235007	108235082	+
GWHAAZE00000002	three_prime_UTR	108235083	108235551	+

Transcript Sequence
>GWHTAAZE009355 GCTCAAGAATTAGATGAGTTATTACATGGGCCAATGCTATATGGATTTCATCGTACTCCTCCACTGGATGTTGAGATCACCTGGTCTGAGTCTGTGAAATCGCCAAGTTCCGTCCCTCTGTCTCTTGTAATAGCCCGAGTTCATCTGTATTTTAAACTTATCTTCTTCATCATCAATTATGCAGGTAAAGAAAGCCTTGCTGAGTGGATAGAGGATCCATCATACCCCAATACAACTTTGTCTTGGAATATTATTCATGGAAGTGGTGAGATCCAACAGAACATTTTGACGTCTGAAACTTATTACATTGCATTGGGTAACTTGAACTCTGAGGCTGTGGAGGTTCAAGTAAATTTCACATTTAAGGCTTTTGTATATAATACAAGCCAGGCATATTATAAGTGCTCTTTGAGTAATGGTGAATGCAATCTGAAGCTTTTTCTTATGAGGGCAGAATCTGCTATCCTAACGTCTCCAGGTCCAGAACAGAGAGATGGAGCCAGGCATCAAACACAAGAAACAGGATCTGAGCGGACCCCACTGGTTCCCCCAAAAGATGATGATCAATCAAGTTGGGGTTCATCTTATGATTCTAATTCTCAAGATGATGAGGAACTTGATAAGTGGCTTGCAGTTGAAGGAAATCAACTAAAGGAGGGAGAAAGTATAAAGGGTCCCCAGCGTCTTTGTGTTATATGCTTTGATGCCCCTAGGGACTGCTTCTTTCTTCCATGTGGGCATTGTGCTGTATGCTTTACATGTGGAACAAGGGTTTTAGAAGAGGGCGGTAGCTGTCCCGTATGTCGTAGGACAATGAAGAAGGTGAGGAAGATCTTTACTGTATAAGACTAAGTACAGCTTGTACAAACTCAGCTATGCAGCAACAATTCCAGGTTTGGGCTAGCCTTAGCTTAATTTTTCTGTATAAACACTTCTCAACTTTGGCCGACGCTGCAAAGGGTTTATGTTTTTTCACACTACATTGCCATTGGAGGAGTAGGGTCACAAGAAGGTTGAACATCAGAGTTCAGGAATTTGACTGGAGATATTTTGCTCGTTTTGCGACCTTCATTGAGACACTTGTTTCGTTGTGATTGGCCAAAAATGTACAGTTTGACTGCCATCATGGATAATATAATGGTGCTTTATATGGGTCTGTTTGAATGTGTAGTTGAAACCAACTGATTTTTTTTAGAATATGCTGAAAGAATTAGAGGGTTCTTGTCTCACCAAATCAGTAGTATCATTTCCATCTTGAGAAAAAACAAGTTGTTTTTCTAATCAAATTCCAACTTTACAACAAATTGCACCCTAA

Network for GWHGAAZE009345

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16041.6	DUF4793	91	166	4.00E-21
PF13920.7	zf-C3HC4_3	227	275	6.90E-14

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.466
	SRR3591706	second leaf	6.334
	SRR3591707	mature leaf	8.178
	SRR3591708	Shoot apex	7.456
	SRR3591709	Stem	24.544
	SRR3591710	White floral bud	7.756
	SRR3591711	White flower	7.172
	SRR3591712	Green floral bud	8.788
	SRR3591713	Yellow flower	4.335
SRP173429	SRR8316895	Juvenile bud stage	3.635
	SRR8316896	Juvenile bud stage	5.972
	SRR8316897	Juvenile bud stage	1.563
	SRR8316894	Third green stage	2.936
	SRR8316900	Third green stage	7.840
	SRR8316901	Third green stage	7.176
	SRR8316898	Complete white stage	2.858
	SRR8316899	Complete white stage	10.102
	SRR8316903	Complete white stage	5.185
	SRR8316902	Silver flowering stage	5.642
	SRR8316904	Silver flowering stage	8.858
	SRR8316905	Silver flowering stage	5.518
	SRR8316906	Gold flowering stage	14.299
	SRR8316907	Gold flowering stage	13.410
	SRR8316908	Gold flowering stage	11.728
SRP132670	SRR6706286	Control	2.590
	SRR6706287	Light intensity 50%	2.715
	SRR6706288	Light intensity 20%	3.598
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.420
	CNS0095593	Slightly white alabastrum(diploid) 2	7.864
	CNS0095594	Slightly white alabastrum(diploid) 3	9.386
	CNS0095595	Whole white alabastrum(diploid) 2	8.342
	CNS0095596	Whole white alabastrum(diploid) 3	5.849
	CNS0095597	Whole white alabastrum(diploid) 4	10.502
	CNS0095598	Silvery flower (diploied) 1	7.754
	CNS0095599	Silvery flower (diploied) 2	6.703
	CNS0095600	Silvery flower (diploied) 3	11.104
	CNS0095601	Golden flower (diploid) 1	8.185
	CNS0095602	Golden flower (diploid) 2	5.362
	CNS0095603	Golden flower (diploid) 3	5.130
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.293
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.068
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.474
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.316
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.364
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.624
	CNS0095610	Silvery flower (tetraploid) 1	7.296
	CNS0095611	Silvery flower (tetraploid) 2	7.885
	CNS0095612	Silvery flower (tetraploid) 3	21.140
	CNS0095613	Golden flower (tetraploid) 1	5.005
	CNS0095614	Golden flower (tetraploid) 2	5.153
	CNS0095615	Golden flower (tetraploid) 3	4.276
CRA001975	CRR073297	Stem 1	4.292
	CRR073298	Stem 2	4.311
	CRR073299	Stem 3	4.492
	CRR073300	Leaf 1	6.204
	CRR073301	Leaf 2	3.710
	CRR073302	Leaf 3	2.506
	CRR073303	Juvenile bud 1	4.784
	CRR073304	Juvenile bud 2	2.609
	CRR073305	Juvenile bud 3	5.037
	CRR073306	Third green 1	10.013
	CRR073307	Third green 2	9.685
	CRR073308	Third green 3	8.577
	CRR073309	Second white 1	18.523
	CRR073310	Second white 2	19.648
	CRR073311	Second white 3	12.685
	CRR073312	Silver flowering 1	10.245
	CRR073313	Silver flowering 2	8.213
	CRR073314	Silver flowering 3	6.187
	CRR073315	Gold flowering 1	1.101
	CRR073316	Gold flowering 2	2.905
	CRR073317	Gold flowering 3	1.130
	CRR073318	Tawny withering 1	5.327
	CRR073319	Tawny withering 2	7.128
	CRR073320	Tawny withering 3	3.605