Gene detail

Detail information of GWHGAAZE009349

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279036.1	0	PREDICTED: uncharacterized protein LOC100241532 [Vitis vinifera]
Swissprot	tr\|Q0E3C8\|CLPB3_ORYSJ	8E-12	Chaperone protein ClpB3, mitochondrial (Precursor)
trEMBL	tr\|F6GUQ9\|F6GUQ9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43472.1}
TAIR10	AT2G29970.1	2E-112	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	108306865	108317768	+
GWHAAZE00000002	mRNA	108306865	108317768	+
GWHAAZE00000002	exon	108306865	108307693	+
GWHAAZE00000002	exon	108308147	108308477	+
GWHAAZE00000002	exon	108315172	108315421	+
GWHAAZE00000002	exon	108315954	108317768	+
GWHAAZE00000002	CDS	108306865	108307693	+
GWHAAZE00000002	CDS	108308147	108308477	+
GWHAAZE00000002	CDS	108315172	108315421	+
GWHAAZE00000002	CDS	108315954	108317768	+

Transcript Sequence
>GWHTAAZE009359 ATGCCAACGCCGGTCAGTGCAGCCAGGCAATGCTTAACCTCGGAGGCGGCGCGTGCACTAGACGACGCCGTGGCCGTAGCCAGCCGCCGCAACCACACCCAGACCACCTCCCTCCACGCGGTCTCTGCCCTTCTCGCCCTCCCCTCGTCCGCCCTCCGCGGCGCGTGCTCACGAGCCATCGGTGGCGGATACCCCACGCGCCTCCAGTTCCGGGCACTGGACCTCTCCGTCGGCGTGTCCCTCGACCGGCTCCCCTCCTCGAAAACCACCGCCGGCGAGGCTCCGCCGGTGTCCAACTCCCTCATGGCGGCGATCAAACGGTCACAAGCCAATCAGAGGAGACACCCAGACAGTTTTACACTGTACCAGCAAGTGCAGAATCAGAACCCATCGTCAATTGTAAAAGTGGAGCTCAAGAATTTTATACTGTCAATTCTTGATGACCCGATTGTCAGTCGGGTATTCGGGGAAGCGGGTTTTCGGAGCTCCGACATAAAGATGGCGATTCTTCGTCCTCCTCGTGTTTCAGAGTGCTATAGTTCGAAGTTTCCTCCTCCTCCCCTGTTTCTTTGCAACTTATCGGATTGGGAATCAAATTGCAGCAGATTATTTGAGAATGGGGAGGATGTAAACAATAGGAGAATTAAGGAAGTTCTTGTGAAGAAGGAGGCTAAAAACCCGTTACTGATCGGAGCTTGTTCAATAGATGCGCTTAGTAATTTTACATTGTGTGTACAGAGAGGCAAATATAGAGTTTTGGAGAATTTAATTGATGGATTGAGTGTAATTTCTGTTGAGAAGGAGATTATTGAGTTTCTTTCTGAAGAAGGTGGGAGCGAAGCAACAATGGAGCTCAAGTTTAAGGAATTGATTGATATGGTGGAGCTTTGTAATGGGTCTGGGGTAATTGTTAACTACGGAGATTTGAAGGTTTTTGTTAATGGGGGATTGGGTGATTCTGTGAGGTATGTTGTTGATAAATTGAGTAATTTGGTGGAGAATTATGGGGAGAAATTGTGGTTGATTGGGGCAGCTTGTGATTGTGAGACATACAAGGAGTTTGTGGCTAAATTTTCTTCAGTTGAGAAAGATTGGGATTTGCATATCTTGCCCATCACTTCTTCTAGATCATCTAATGGAGGGTCATACTCAAAAACCAGCCTGATGGGGTCCTTTGTGCCATTTGCTGGCTTCTTTCCTACTCCTTCCGAGTTTGAAAGTCTATCGAGCACAACAAATCATCCCCTAACTCATTGTAAACTGTGCAATGAAAAGTACGAGCAAGAAGTTTCTCTTGTTCTAAAGGGAGGAGGATCCACTAATTCAGTTTCTGATCAATACTCGCCAACTTTACCATCGTGGTTACAAAGGGATGAAAGTGACACTGCCCAGAGAGTGAATGCTGTAGAGGCCAAAGATGGGAGTGTTTTGAAAGGAAGACTTATGGGGCTGCAAAGAAAATGGAACAATATCTGCCAGCGTCTTCATCATACTCGCTCATTTCAACAAAAAGTCCCACAGGTCAAGTCCCAAGTTTCCGGTTTTGATGGCTTTAACCGCAATACTGACAAGAATGAAACCAACTGTCGTCAAGATTCATTACTGACTGAAACCAGATGTACAAATCTAAGTTCCCCCACGAACTTGCAAAATATTTCTTCCCCCAGAAAAAATATACCAACACTAGTTTCTATTGAAGTCGAGAATGCACGTTTCCAACAGAATCTATGCGTTGATGATAGTTCTTCCTCATCCACTACTTCAGTGACCACGGATTTGGGGCTAGGAACCCTCCTTTACGCATTTTCCAAGAAAGGGCCCAATAAACCTGTATTCGAGAATCATAAAGAAAATCTTCAAAACTTCTCAGGGTCTATTTCTACTGAGGTCAGTAGGATTGTTAAGAATGCCTCAAATCATATAACACGATTTTCTCCCCGTTCTGGTTCTTATTTTGGAGGGCAGTTTGATGAAAAAGATTTCAAGAACCTTTCGAGAGTTCTTGTAGAAAAGGTTGGTTATCAAGTTGAGGCTATTTGTACCATTAGTCAAGCAATATCCCGTTGTAGAAGTGGAAATGGGAGACACCGTGGCTCGAGTCACAGAGGAGATGTTTGGCTCGGCTTTTTAGGACCAGACAAAGTGGGAAAGAAGAGAATTGCTGCAGCATTAGCTGAGATTTTGTTTGGCAGCAGGGAAAACTTAATATCTGTGGATTTGAGTTCTGAAGAAGATAATTTCGGCCGATCAACTACTGTATTTGACCATCAAGGTTTAAAAGGCTATAATGTGAAGTTTAGGGGGAAAACAGTTGTTGATTACATCGCTGAGGAGTTGAGTAGAAAACCCCGTTCAGTTGTGTTTCTTGAAAACTTAGATAAGGCCGATTTTCTAGCTCAGCATAGCTTGTCTCGGGCTATAAGAACTGGTAAATTTCCAGATTCATGCGGGAGAGAAATCAGCATAAACAATACGATATTTGTTACTACATCTAGCATAATGAAGGTCAATCAAGATTTCCTTTCTGGGAAACAACCATCCCCTGAATTTTCTGAGGAAAGAATACTAGGAGCCAAACGGTCACAAATCCAAATTTTAGTCGAAACTTCTGCTGGGGCCATGACAAGAATTAATGGGTCTAATGTTTTTCTATCAACCAAGAAACGAAATTCAAACACATTATCAGTAAATAAAAGAAAGTTTATTGACACTGGCGATTCAACAGAGCAGGATGAGACACTTGAAACACCAAAAAGGGTATGTTTGGATCTGAATCTGCCAGTGGAGGAAATTGAAGAGGGAAATGAATATGGGAACTGTGACAGTGACTCTGGCTCTGAAAACCAGGGACTGTGGTTGGAAGATTTCTTGGACCAAATGGACGAAAAAGTGGGGTTGGAGTCATTTGATTTCCATGCACTTGCTAAGAAAATATTGAAGGAAATCGGGCTAGTTTTCCAGGAAATGGTTGGAATCAACGTTTGGCTGGAAATTGATGAAGAAGTAATGGTTCAAATGCTTGCGGCTGCTTGGTTATCGGAGGAAAAAGGAGGAATTGAAGATTGGATTCAAAAGGTTCTTTGTAAGAGCTTTGTGGAATTGCACCAAGAACATCGGCTTACGGCGAGGTCTGTTGTAAGATTAGTTGCTTTTGAAGGGCTTCTTGGGGAAGATGATGAAGTTCTTCCTCATGTTTGCCTTCCTGCAAGAATTATTCTGAGATGA

Network for GWHGAAZE009349

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07724.15	AAA_2	709	836	8.10E-06

Protein Sequence

>GWHPAAZE009354
MPTPVSAARQCLTSEAARALDDAVAVASRRNHTQTTSLHAVSALLALPSSALRGACSRAIGGGYPTRLQFRALDLSVGVSLDRLPSSKTTAGEAPPVSNSLMAAIKRSQANQRRHPDSFTLYQQVQNQNPSSIVKVELKNFILSILDDPIVSRVFGEAGFRSSDIKMAILRPPRVSECYSSKFPPPPLFLCNLSDWESNCSRLFENGEDVNNRRIKEVLVKKEAKNPLLIGACSIDALSNFTLCVQRGKYRVLENLIDGLSVISVEKEIIEFLSEEGGSEATMELKFKELIDMVELCNGSGVIVNYGDLKVFVNGGLGDSVRYVVDKLSNLVENYGEKLWLIGAACDCETYKEFVAKFSSVEKDWDLHILPITSSRSSNGGSYSKTSLMGSFVPFAGFFPTPSEFESLSSTTNHPLTHCKLCNEKYEQEVSLVLKGGGSTNSVSDQYSPTLPSWLQRDESDTAQRVNAVEAKDGSVLKGRLMGLQRKWNNICQRLHHTRSFQQKVPQVKSQVSGFDGFNRNTDKNETNCRQDSLLTETRCTNLSSPTNLQNISSPRKNIPTLVSIEVENARFQQNLCVDDSSSSSTTSVTTDLGLGTLLYAFSKKGPNKPVFENHKENLQNFSGSISTEVSRIVKNASNHITRFSPRSGSYFGGQFDEKDFKNLSRVLVEKVGYQVEAICTISQAISRCRSGNGRHRGSSHRGDVWLGFLGPDKVGKKRIAAALAEILFGSRENLISVDLSSEEDNFGRSTTVFDHQGLKGYNVKFRGKTVVDYIAEELSRKPRSVVFLENLDKADFLAQHSLSRAIRTGKFPDSCGREISINNTIFVTTSSIMKVNQDFLSGKQPSPEFSEERILGAKRSQIQILVETSAGAMTRINGSNVFLSTKKRNSNTLSVNKRKFIDTGDSTEQDETLETPKRVCLDLNLPVEEIEEGNEYGNCDSDSGSENQGLWLEDFLDQMDEKVGLESFDFHALAKKILKEIGLVFQEMVGINVWLEIDEEVMVQMLAAAWLSEEKGGIEDWIQKVLCKSFVELHQEHRLTARSVVRLVAFEGLLGEDDEVLPHVCLPARIILR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0019538	biological_process	protein metabolic process
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.664
	SRR3591706	second leaf	14.504
	SRR3591707	mature leaf	16.192
	SRR3591708	Shoot apex	9.825
	SRR3591709	Stem	13.003
	SRR3591710	White floral bud	2.259
	SRR3591711	White flower	2.206
	SRR3591712	Green floral bud	8.351
	SRR3591713	Yellow flower	1.468
SRP173429	SRR8316895	Juvenile bud stage	1.952
	SRR8316896	Juvenile bud stage	2.517
	SRR8316897	Juvenile bud stage	1.098
	SRR8316894	Third green stage	1.584
	SRR8316900	Third green stage	6.215
	SRR8316901	Third green stage	7.019
	SRR8316898	Complete white stage	0.628
	SRR8316899	Complete white stage	9.949
	SRR8316903	Complete white stage	1.406
	SRR8316902	Silver flowering stage	0.490
	SRR8316904	Silver flowering stage	0.442
	SRR8316905	Silver flowering stage	0.121
	SRR8316906	Gold flowering stage	0.803
	SRR8316907	Gold flowering stage	0.182
	SRR8316908	Gold flowering stage	0.485
SRP132670	SRR6706286	Control	4.173
	SRR6706287	Light intensity 50%	5.248
	SRR6706288	Light intensity 20%	5.302
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.047
	CNS0095593	Slightly white alabastrum(diploid) 2	4.637
	CNS0095594	Slightly white alabastrum(diploid) 3	2.300
	CNS0095595	Whole white alabastrum(diploid) 2	4.118
	CNS0095596	Whole white alabastrum(diploid) 3	2.488
	CNS0095597	Whole white alabastrum(diploid) 4	3.263
	CNS0095598	Silvery flower (diploied) 1	2.830
	CNS0095599	Silvery flower (diploied) 2	2.294
	CNS0095600	Silvery flower (diploied) 3	0.872
	CNS0095601	Golden flower (diploid) 1	3.618
	CNS0095602	Golden flower (diploid) 2	1.784
	CNS0095603	Golden flower (diploid) 3	1.716
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.250
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.877
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.071
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.932
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.701
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.458
	CNS0095610	Silvery flower (tetraploid) 1	0.589
	CNS0095611	Silvery flower (tetraploid) 2	0.769
	CNS0095612	Silvery flower (tetraploid) 3	0.242
	CNS0095613	Golden flower (tetraploid) 1	0.743
	CNS0095614	Golden flower (tetraploid) 2	0.658
	CNS0095615	Golden flower (tetraploid) 3	0.220
CRA001975	CRR073297	Stem 1	3.055
	CRR073298	Stem 2	4.863
	CRR073299	Stem 3	1.826
	CRR073300	Leaf 1	9.526
	CRR073301	Leaf 2	5.980
	CRR073302	Leaf 3	5.308
	CRR073303	Juvenile bud 1	5.584
	CRR073304	Juvenile bud 2	2.441
	CRR073305	Juvenile bud 3	8.563
	CRR073306	Third green 1	0.619
	CRR073307	Third green 2	0.740
	CRR073308	Third green 3	1.372
	CRR073309	Second white 1	0.169
	CRR073310	Second white 2	0.067
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.076
	CRR073313	Silver flowering 2	0.066
	CRR073314	Silver flowering 3	0.126
	CRR073315	Gold flowering 1	4.664
	CRR073316	Gold flowering 2	5.879
	CRR073317	Gold flowering 3	5.603
	CRR073318	Tawny withering 1	2.843
	CRR073319	Tawny withering 2	2.151
	CRR073320	Tawny withering 3	2.434