Gene detail

Detail information of GWHGAAZE009352

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007016898.1	3.7783E-140	Mitogen-activated protein kinase kinase kinase 13, putative [Theobroma cacao]
Swissprot	tr\|Q40541\|NPK1_TOBAC	2E-48	Mitogen-activated protein kinase kinase kinase NPK1
trEMBL	tr\|A0A061GYZ1\|A0A061GYZ1_THECC	1E-140	Mitogen-activated protein kinase kinase kinase 13, putative {ECO:0000313\|EMBL:EOY34517.1}
TAIR10	AT2G30040.1	5E-99	mitogen-activated protein kinase kinase kinase 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	108489620	108490885	+
GWHAAZE00000002	mRNA	108489620	108490885	+
GWHAAZE00000002	exon	108489620	108490885	+
GWHAAZE00000002	CDS	108489620	108490885	+

Transcript Sequence
>GWHTAAZE009362 ATGGAGAAATCCAAAATTCAACAATCTAGCTGGATTAGAGGGAGTTGTATAGGCAGAGGTTCGTTCGGTACCGTTAATCTTGCCGTCGACAAATCCGACGGTCATATTTTCGTCGTCAAATCAGTAGAACATAACACTTGTTTGCCATATAAGGTGGAGGCTTTAGAGAACGAAATTAAAATTCTCCGATCAATTTCGTCGCCGTACGTGGTGGAATATCTCGGCCACGACATGTCGATTGAGCAGGCCACGTCGTATCGGAACTTGCACGTGGAGTACTTGCCTGGTGGCACCGCCGCTGAGTTGGCCGGAGCTGACGTGGAGGAGGGGCTTTTAAGGTCGTACACTAGGTGTATTGTATCAGCTTTGATGTACGTTCACTCGTTGGGCATTGTGCATTGCGACGTGAAGGGGAATAACGTGTTGGTGGGGCCCACACCAGGGACTGCCAAGCTGGCTGATTTTGGTTCCGCAAAGGAATCAGCCACTCCCATGTCGCCACGTGGAAGTCCACTGTGGATGGCCCCGGAGGTTGTGAGGGGGGAGTACCAGGGGCCGGAGTCTGACGTGTGGTCTTTGGGTTGCACGGTGATCGAGATGGTTACCGGAAAGCCTGCGTGGGAAGATCGAGGTGGCGACACTCTGTGTCGAATCGGTTACTCTGACGAGTTACCGGAGATTCCGTCTAAGTTATCGACACTCGGTCAGGATTTCGTTGACAAGTGTTTGAGGAGAAAGGTTTGCGAGAGGTGGAGCTGTGATCAGCTATTACAACACCCATTTGTATCATCCTGTGCGCCACCAACGGTGCGCTCTGATTGGTCCCCTAGATGTGTACTAGATTGTTTTGATGATGATGAAGAAGATGACCAAGTTATTCAAATTGAGAGTTCGAGATCTGATGCAAGTGAACGAATAGGGAAGTTGGCTTCAACGGTAGGGGCAATTTGGGAATCTGACGGTTGGATGTTTGTGAGGCACGTGACCAGTGTAACCGAAGAATCTTGTAATCTGGAAGAAGGGGTAAGTTCGGTGACTGAGGATGAAATATTGTGGGTGAATTTAGAATATTTGGATTCGGGTCGGGTCGAAGCTTGTTTGAGTTGTCCGTTTGAGTCACAGAAAACGAATTGGGCGGTAGAGTGGGGAGAGATGAACATTTTTAATTCTTGTAAAATAAATTTATTGTTATCATACTTATTGTGTTATTGCAAATTAGTCACTGTAAATTTACAATCACTTCTCTATTGTAACAGTATTAATTAA

Network for GWHGAAZE009352

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	15	262	5.20E-53

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.438
	SRR3591706	second leaf	0.104
	SRR3591707	mature leaf	0.099
	SRR3591708	Shoot apex	1.292
	SRR3591709	Stem	1.263
	SRR3591710	White floral bud	69.145
	SRR3591711	White flower	23.787
	SRR3591712	Green floral bud	8.487
	SRR3591713	Yellow flower	24.837
SRP173429	SRR8316895	Juvenile bud stage	1.165
	SRR8316896	Juvenile bud stage	1.154
	SRR8316897	Juvenile bud stage	0.790
	SRR8316894	Third green stage	1.031
	SRR8316900	Third green stage	2.896
	SRR8316901	Third green stage	2.793
	SRR8316898	Complete white stage	27.670
	SRR8316899	Complete white stage	6.233
	SRR8316903	Complete white stage	47.912
	SRR8316902	Silver flowering stage	11.227
	SRR8316904	Silver flowering stage	20.638
	SRR8316905	Silver flowering stage	14.663
	SRR8316906	Gold flowering stage	25.400
	SRR8316907	Gold flowering stage	36.526
	SRR8316908	Gold flowering stage	21.336
SRP132670	SRR6706286	Control	6.844
	SRR6706287	Light intensity 50%	8.287
	SRR6706288	Light intensity 20%	3.959
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.494
	CNS0095593	Slightly white alabastrum(diploid) 2	3.159
	CNS0095594	Slightly white alabastrum(diploid) 3	1.211
	CNS0095595	Whole white alabastrum(diploid) 2	2.700
	CNS0095596	Whole white alabastrum(diploid) 3	1.656
	CNS0095597	Whole white alabastrum(diploid) 4	2.834
	CNS0095598	Silvery flower (diploied) 1	15.368
	CNS0095599	Silvery flower (diploied) 2	15.438
	CNS0095600	Silvery flower (diploied) 3	26.236
	CNS0095601	Golden flower (diploid) 1	9.726
	CNS0095602	Golden flower (diploid) 2	25.885
	CNS0095603	Golden flower (diploid) 3	26.001
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.577
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.111
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.665
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.309
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.976
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.935
	CNS0095610	Silvery flower (tetraploid) 1	12.599
	CNS0095611	Silvery flower (tetraploid) 2	9.947
	CNS0095612	Silvery flower (tetraploid) 3	67.900
	CNS0095613	Golden flower (tetraploid) 1	13.976
	CNS0095614	Golden flower (tetraploid) 2	11.505
	CNS0095615	Golden flower (tetraploid) 3	30.369
CRA001975	CRR073297	Stem 1	3.262
	CRR073298	Stem 2	4.708
	CRR073299	Stem 3	3.037
	CRR073300	Leaf 1	11.565
	CRR073301	Leaf 2	10.704
	CRR073302	Leaf 3	7.608
	CRR073303	Juvenile bud 1	10.043
	CRR073304	Juvenile bud 2	32.682
	CRR073305	Juvenile bud 3	11.547
	CRR073306	Third green 1	395.508
	CRR073307	Third green 2	356.266
	CRR073308	Third green 3	310.866
	CRR073309	Second white 1	491.414
	CRR073310	Second white 2	358.534
	CRR073311	Second white 3	319.038
	CRR073312	Silver flowering 1	277.149
	CRR073313	Silver flowering 2	281.269
	CRR073314	Silver flowering 3	260.592
	CRR073315	Gold flowering 1	0.052
	CRR073316	Gold flowering 2	0.207
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.876
	CRR073319	Tawny withering 2	1.602
	CRR073320	Tawny withering 3	0.716