Gene detail

Detail information of GWHGAAZE009358

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010092799.1	Pyruvate decarboxylase isozyme 2 [Morus notabilis]
Swissprot	tr\|P51846\|PDC2_TOBAC	Pyruvate decarboxylase 2
trEMBL	tr\|W9QRW2\|W9QRW2_9ROSA	Pyruvate decarboxylase isozyme 2 {ECO:0000313\|EMBL:EXB52385.1}
TAIR10	AT4G33070.1	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	108603789	108609281	+
GWHAAZE00000002	mRNA	108603789	108609281	+
GWHAAZE00000002	exon	108603789	108604259	+
GWHAAZE00000002	exon	108605661	108605824	+
GWHAAZE00000002	exon	108606032	108606682	+
GWHAAZE00000002	exon	108606760	108606877	+
GWHAAZE00000002	exon	108608058	108608246	+
GWHAAZE00000002	exon	108609111	108609281	+
GWHAAZE00000002	CDS	108603789	108604259	+
GWHAAZE00000002	CDS	108605661	108605824	+
GWHAAZE00000002	CDS	108606032	108606682	+
GWHAAZE00000002	CDS	108606760	108606877	+
GWHAAZE00000002	CDS	108608058	108608246	+
GWHAAZE00000002	CDS	108609111	108609281	+

Transcript Sequence
>GWHTAAZE009368 ATGGAAACATCAGTCGGTACAATCTCCACCGTCCAAGACTCCCAGCCCACAACCGGCATCTCTTCCCCGGAGGCCACCCTGGGGCGGCACCTGGGTCGCCGCCTCGTCGAGATCGGAATCAGCGACATCTTCACCGTCCCTGGAGATTTCAACCTCACTCTATTGGACCATTTGATAGCGGAGCCGGGGCTGACGAATATCGGGTGTTGCAATGAGCTAAATGCCGGGTACGCTGCAGACGGGTACGCGCGGTCGAAGGGCGTGGGAGCGTGCGTGGTGACGTTTACGGTGGGGGGACTGAGTGTTTTGAACGCAATAGCGGGGGCATATAGTGAGAACTTGCCGGTGATATGTGTGGTGGGTGGGCCCAATACGAATGATTATGGGACCAATAGGATTTTGCATCATACTATTGGCTTATCTGATTTTAGCCAGGAGCTCAGGTGTTTTCAGACTGTTACTTGCTATCAGGCAGTAGTGAATAACTTGGAAGATGCACATGAACAAATAGATACAGCCATATCAACAGCTCTGAAGGAATGCAAGCCTGTTTACATCAGCATTAGTTGCAACTTGGCTGGTATCACTCATCCCACTTTCAGCAGAGAGCCCATTCCATTCTCTCTTACCCCCCGAATAAGCAACCCGCGGGGACTAGAAGCTGCCGTGGACGCTGCAGCCGCCTTTCTAAACAAGGCGGTGAAACCTGTGATGGTGGGCGGACCAAAATTGCGTGTGGCCAACGCTTGCAAAGCGTTTGTTGAATTAGCAGACGCATGTGGCTACGCACTGGCAGTCATGCCATCGGGCAAAGGCCTGGTGCCAGAGCACCACCCCCACTTCATGGGCACATACTGGGGGGCAGTGGGCACCCCTTTCTGCGGGGAAATTGTCGAATCGGCGGATGCATATTTATTCGCTGGCCCAATCTTCAATGACTACAGCTCGGTTGGGTACTCCCTCCTCCTCAAAAAGGACAAAGCCATCATAGTTCAGCCCAACCGTGTTGTTATTGCTAACGGCCCTGCTTTTGGATGCGTAATGATGAGAGATTTCCTTAGCGAATTGGCCAAGAAAGTTAAAAAGAACACAACCGCGTATGAGAATTACCATAGGATTTATGTGCCCGAGGGGGTGCCGATAAAAAGTGAGCCGACCGACCCTTTGAGGGTCAACATTATGTTCCAACACATACAAAAGATGCTGTCCAAAGATACTGCGGTCATTGCAGAGACTGGGGACTCGTGGTTTAATTGTCAGAAGCTGAAACTACCGGAGGGATGTGGGTACGAGTTTCAAATGCAGTATGGTTCTATTGGGTGGTCTGTTGGTGCTACTCTTGGATATGCTCAGTCTGTGCTAGAGAAGAGAGTCATTGCTTGTATTGGTGATGGCAGTTTTCAAGTAACTGCACAAGATGTGTCAACAATGATTCGATGTGGGCAAAAGACGATAATCTTTCTGATAAACAACGGTGGATACACAATTGAAGTTGAAATCCACGATGGACCTTACAATGTGATCAAGAACTGGAACTACACTGCCCTTGTTGAGGCCTTCCACAATGGAGAAGGCAACTGCTGGACAATGAAGGTAAGGAATGAGAAAGAGCTAATTGAAGCAATAGAAACAGCAACAGGGGAGAAGAAAGATTGCTTGTGCTTCATTGAAGTGATTGTTCACAAAGACGATACCAGCAAAGAGCTTCTCGAATGGGGTTCTCGTGTCTCTTCTGCCAATAGCCGCCTCCCCAATCCCCAGTAA

Network for GWHGAAZE009358

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02776.19	TPP_enzyme_N	26	192	1.50E-33
PF00205.23	TPP_enzyme_M	223	337	3.30E-20
PF02775.22	TPP_enzyme_C	433	558	7.80E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01568	PDC, pdc	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycolysis / Gluconeogenesis	map00010

Gene Ontology

GO term	Ontology	Name
GO:0030976	molecular_function	thiamine pyrophosphate binding
GO:0000287	molecular_function	magnesium ion binding
GO:0016831	molecular_function	carboxy-lyase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.899
	SRR3591706	second leaf	5.127
	SRR3591707	mature leaf	0.962
	SRR3591708	Shoot apex	9.349
	SRR3591709	Stem	2.390
	SRR3591710	White floral bud	4.803
	SRR3591711	White flower	1.718
	SRR3591712	Green floral bud	116.054
	SRR3591713	Yellow flower	0.209
SRP173429	SRR8316895	Juvenile bud stage	10.239
	SRR8316896	Juvenile bud stage	91.342
	SRR8316897	Juvenile bud stage	28.609
	SRR8316894	Third green stage	44.421
	SRR8316900	Third green stage	141.637
	SRR8316901	Third green stage	168.973
	SRR8316898	Complete white stage	0.228
	SRR8316899	Complete white stage	1.362
	SRR8316903	Complete white stage	0.102
	SRR8316902	Silver flowering stage	0.306
	SRR8316904	Silver flowering stage	0.249
	SRR8316905	Silver flowering stage	0.123
	SRR8316906	Gold flowering stage	0.264
	SRR8316907	Gold flowering stage	0.433
	SRR8316908	Gold flowering stage	0.336
SRP132670	SRR6706286	Control	52.416
	SRR6706287	Light intensity 50%	49.917
	SRR6706288	Light intensity 20%	42.921
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	52.125
	CNS0095593	Slightly white alabastrum(diploid) 2	35.743
	CNS0095594	Slightly white alabastrum(diploid) 3	70.430
	CNS0095595	Whole white alabastrum(diploid) 2	62.710
	CNS0095596	Whole white alabastrum(diploid) 3	77.854
	CNS0095597	Whole white alabastrum(diploid) 4	54.547
	CNS0095598	Silvery flower (diploied) 1	1.834
	CNS0095599	Silvery flower (diploied) 2	3.125
	CNS0095600	Silvery flower (diploied) 3	0.770
	CNS0095601	Golden flower (diploid) 1	1.173
	CNS0095602	Golden flower (diploid) 2	0.938
	CNS0095603	Golden flower (diploid) 3	0.772
	CNS0095604	Slightly white alabastrum(tetraploid) 1	128.421
	CNS0095605	Slightly white alabastrum(tetraploid) 2	108.958
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.166
	CNS0095607	Whole white alabastrum(tetraploid) 1	119.971
	CNS0095608	Whole white alabastrum(tetraploid) 2	132.811
	CNS0095609	Whole white alabastrum(tetraploid) 3	153.566
	CNS0095610	Silvery flower (tetraploid) 1	1.423
	CNS0095611	Silvery flower (tetraploid) 2	0.891
	CNS0095612	Silvery flower (tetraploid) 3	2.263
	CNS0095613	Golden flower (tetraploid) 1	0.672
	CNS0095614	Golden flower (tetraploid) 2	0.817
	CNS0095615	Golden flower (tetraploid) 3	0.804
CRA001975	CRR073297	Stem 1	16.904
	CRR073298	Stem 2	26.330
	CRR073299	Stem 3	15.543
	CRR073300	Leaf 1	36.370
	CRR073301	Leaf 2	44.116
	CRR073302	Leaf 3	39.690
	CRR073303	Juvenile bud 1	24.210
	CRR073304	Juvenile bud 2	24.151
	CRR073305	Juvenile bud 3	1.154
	CRR073306	Third green 1	0.812
	CRR073307	Third green 2	0.524
	CRR073308	Third green 3	0.450
	CRR073309	Second white 1	0.372
	CRR073310	Second white 2	0.175
	CRR073311	Second white 3	1.624
	CRR073312	Silver flowering 1	0.888
	CRR073313	Silver flowering 2	0.958
	CRR073314	Silver flowering 3	0.433
	CRR073315	Gold flowering 1	2.729
	CRR073316	Gold flowering 2	3.045
	CRR073317	Gold flowering 3	1.561
	CRR073318	Tawny withering 1	2.546
	CRR073319	Tawny withering 2	1.745
	CRR073320	Tawny withering 3	2.574