Gene detail

Detail information of GWHGAAZE009369

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008354886.1	0	PREDICTED: probable inactive receptor-like protein kinase At3g56050 [Malus domestica]
Swissprot	tr\|C0LGQ4\|MRH1_ARATH	9E-168	Probable LRR receptor-like serine/threonine-protein kinase MRH1 (Precursor)
trEMBL	tr\|A0A061H0C9\|A0A061H0C9_THECC	0	Leucine-rich repeat protein kinase family protein, putative isoform 1 {ECO:0000313\|EMBL:EOY34564.1}
TAIR10	AT2G40270.2	1E-112	Protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	108853006	108860528	-
GWHAAZE00000002	mRNA	108853006	108860528	-
GWHAAZE00000002	exon	108860454	108860528	-
GWHAAZE00000002	exon	108858016	108858145	-
GWHAAZE00000002	exon	108857584	108857722	-
GWHAAZE00000002	exon	108856931	108857002	-
GWHAAZE00000002	exon	108856684	108856827	-
GWHAAZE00000002	exon	108856451	108856591	-
GWHAAZE00000002	exon	108855104	108855684	-
GWHAAZE00000002	exon	108854830	108855020	-
GWHAAZE00000002	exon	108854604	108854736	-
GWHAAZE00000002	exon	108853006	108853613	-
GWHAAZE00000002	five_prime_UTR	108860454	108860528	-
GWHAAZE00000002	five_prime_UTR	108858125	108858145	-
GWHAAZE00000002	CDS	108858016	108858124	-
GWHAAZE00000002	CDS	108857584	108857722	-
GWHAAZE00000002	CDS	108856931	108857002	-
GWHAAZE00000002	CDS	108856684	108856827	-
GWHAAZE00000002	CDS	108856451	108856591	-
GWHAAZE00000002	CDS	108855104	108855684	-
GWHAAZE00000002	CDS	108854830	108855020	-
GWHAAZE00000002	CDS	108854604	108854736	-
GWHAAZE00000002	CDS	108853006	108853613	-

Transcript Sequence
>GWHTAAZE009379 CTCAGAGGGTGCCACCGTCTCAGCCCCAATCCCGTCACAGCCTCACAGGTACTCGTCTTAGCCTCCCGTTCACAGGTATTTTACAAATTCCTTGCAATGGATGAAGGGTGGAGATGTAATCCGGTGAAGCTTCGTATACAAGTAATGGTGGTGGTCCTCATGATTATTCATAATTTTAGTCCGTGTTGGTCTCTCAATAGCGAAGGAATGGCGTTGTTGAAGTTCCGGGAGAGAGTAGTGAGAGATCCGTTCGGGGCTCTATCGGACTGGAATTATAGTCATGGAGAGTCCGACCACTGCTCTTGGTTCGGAGTTGAGTGTTCTGATGGCAGAATTGTGATCTTGAACTTGAAAGATCTTTGTATTGGAGGAACACTAGCACCTGAACTTGGGAAGCTTATCTATGCAAAGTCTATTATTTTACGAAACAATTCCTTTTACGGAAACATCCCTAAAGAAATTGGAGAACTGAAGGAGCTGGAAGTGTTGGACTTGGGATATAATAACTTCACAGGTCCATTTCCGTCCAATTTTGGAAATAATCTCTCCCTGTCAATTCTTCTACTGGATAATAATGAGTTCCTTGGTAGCATATCTGCTGAACTTAATGATCTTAAGATAGTTTCTGAATCTCAAGTGGATAAGAACCAGTTAACTAGTGCTTCATTCAAAACTAGTTGCGAAAGCAGATCTGGTTCCTGGAACACCGTGCGACCCAGATATAAAGCTCAGCGGGGCCTACTACAGGTGAAAGATGCCCTAAACCCAAAGAAGCTTGAAAGAGAGAGACACCATAAGAGGGACTCCAAATCTAACTCCTTGCCACCATTGTCTTCACTCTCACCCTCACCCTCACCCTCACCGTATCCTCCTTCGAGTACACCATTATCGACTATATCATTCCCACCATTAACCTCTATAGCATCTCCACCAGAGTCTCAATTTTCTTCCCCATCAGAGTCTTTGGCACCTTCACCCTTGCCAATGCCGCCACCAAGTCCTTCACCTACTCCAATGGAACCACCGGTCGTGGTTTCCACTTCACCATTAGCCCATCCTGCTCTAATGCCTTCTTCCCCTGCTTCAAATCCTAGCGGAAGCACAGGATCAAGTTCCAAGCCAAAGCATCGTGTTATTCTTATATGGTCTGGAATAATAGGTGGTTCTCTATTCTTATTTATATCAGCAGTTGCCATTGTTTTATGTCAAAGAAGTAAGATGGTTACTGTCAAACCTTGGGCCACAGGGTTAAGTGGGCAGCTGCAGAAAGCATTTGTTACAGGTGTACCGAAGCTCCAGCGATCAGAACTTGAAACAGCTTGTGAAGATTTCAGTAATATAATTGGCACTTTACCAGATGGGATGGTGTATAAAGGGACCCTATCAAGCGGAGTTGAGATAGCAGTGACATCTGCTGTGGTAAAGTCAGCTCAGGACTGGTCCAAGAACTTAGAAACCCAATTCAGAAACAAGGTAGAGACATTGTCAAAGATGAACCACAAGAACTTGGTTAATCTTATTGGATATTGTGAAGAAGAGGAACCTTTCACAAGAATGATGGTTTTTGAGTATGCTCCAAATGGAACATTGTTTGAGCATCTACACGTGAAAGAAGCAGAGCACTTGGACTGGAGAATGCGACTACGAATAGCTACGGGCCTGGCCTACTGCCTCGATTATATGCACCAACTCACTCCACCCATAGCCCACGGAAACCTACAATCTTCTTCTGTATACCTTACAGAAGACTATGCTCCAAAAATCTCGGATTTTAGCTTTTGGAACGAGGCAACTGCAGCTAAGATGGATTCAGCTACAATGGAACTCTTAGAAACCCTACCATCGGACCCGGGGAGCAATGTTTACAGCTTTGGGGTAATCTTATTTGAAATGATAACAGGTCAGCTGCCATACTCGGTGGGTAATGGGCCTCTGGAGGATTGGGCGTCAACCTACTTGAAGGGCGAACGACCCTTTAGAGAAATGGTAGACCCCACTTTGACATCTTTTGAAGAGGAAGAGTTTGAGAAATTGCAAGAATTGGTAAAAGATTGTGTCAAACAAGACCCAAAGGGGAGATTGACAATGAGAGAGGTTACGGCTAGGTTGAAGGAGATAACAGGAATGGGGCCGGACAGTGCGGCTCCAAAAGTGTCTCCTCTTTGGTGGGCAGAATTAGAGATTTTGTCGACAGTGACGACAGATTCGAGTTAA

Network for GWHGAAZE009369

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	34	76	1.20E-09
PF07714.18	PK_Tyr_Ser-Thr	416	671	4.30E-28

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VI-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.605
	SRR3591706	second leaf	2.525
	SRR3591707	mature leaf	0.544
	SRR3591708	Shoot apex	6.697
	SRR3591709	Stem	47.120
	SRR3591710	White floral bud	2.841
	SRR3591711	White flower	2.402
	SRR3591712	Green floral bud	6.468
	SRR3591713	Yellow flower	0.901
SRP173429	SRR8316895	Juvenile bud stage	5.663
	SRR8316896	Juvenile bud stage	7.312
	SRR8316897	Juvenile bud stage	4.108
	SRR8316894	Third green stage	3.584
	SRR8316900	Third green stage	6.520
	SRR8316901	Third green stage	7.684
	SRR8316898	Complete white stage	0.744
	SRR8316899	Complete white stage	9.098
	SRR8316903	Complete white stage	1.603
	SRR8316902	Silver flowering stage	0.691
	SRR8316904	Silver flowering stage	1.229
	SRR8316905	Silver flowering stage	0.436
	SRR8316906	Gold flowering stage	0.603
	SRR8316907	Gold flowering stage	0.579
	SRR8316908	Gold flowering stage	0.441
SRP132670	SRR6706286	Control	7.304
	SRR6706287	Light intensity 50%	7.007
	SRR6706288	Light intensity 20%	7.159
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.765
	CNS0095593	Slightly white alabastrum(diploid) 2	7.432
	CNS0095594	Slightly white alabastrum(diploid) 3	5.941
	CNS0095595	Whole white alabastrum(diploid) 2	4.291
	CNS0095596	Whole white alabastrum(diploid) 3	3.297
	CNS0095597	Whole white alabastrum(diploid) 4	3.737
	CNS0095598	Silvery flower (diploied) 1	3.944
	CNS0095599	Silvery flower (diploied) 2	2.649
	CNS0095600	Silvery flower (diploied) 3	2.148
	CNS0095601	Golden flower (diploid) 1	2.127
	CNS0095602	Golden flower (diploid) 2	2.573
	CNS0095603	Golden flower (diploid) 3	2.127
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.816
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.688
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.163
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.375
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.337
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.342
	CNS0095610	Silvery flower (tetraploid) 1	0.128
	CNS0095611	Silvery flower (tetraploid) 2	0.054
	CNS0095612	Silvery flower (tetraploid) 3	0.287
	CNS0095613	Golden flower (tetraploid) 1	0.024
	CNS0095614	Golden flower (tetraploid) 2	0.006
	CNS0095615	Golden flower (tetraploid) 3	0.153
CRA001975	CRR073297	Stem 1	8.700
	CRR073298	Stem 2	8.052
	CRR073299	Stem 3	5.950
	CRR073300	Leaf 1	9.809
	CRR073301	Leaf 2	9.784
	CRR073302	Leaf 3	5.303
	CRR073303	Juvenile bud 1	6.515
	CRR073304	Juvenile bud 2	3.676
	CRR073305	Juvenile bud 3	8.402
	CRR073306	Third green 1	0.376
	CRR073307	Third green 2	0.456
	CRR073308	Third green 3	0.922
	CRR073309	Second white 1	0.125
	CRR073310	Second white 2	0.205
	CRR073311	Second white 3	0.278
	CRR073312	Silver flowering 1	0.194
	CRR073313	Silver flowering 2	0.145
	CRR073314	Silver flowering 3	0.272
	CRR073315	Gold flowering 1	2.796
	CRR073316	Gold flowering 2	3.358
	CRR073317	Gold flowering 3	3.086
	CRR073318	Tawny withering 1	14.826
	CRR073319	Tawny withering 2	13.022
	CRR073320	Tawny withering 3	19.194